SimpleSearch - Line and FST details
Line specific information
| Line ID | 025D01 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N402341) |
| Segregation Analysis | 90:68:63 |
| Confirmed for Hit | At1g66780 At2g05890 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 6019, 10491, 11016, 91589, 91604, 91619, 91620, 91621, 91622, 91623, 91625, 91626, 91627 |
Gene hit At1g66780
| Sequence (A. th genome BLAST matches underlined) | >08-K028757-022-025-D01C-3144 GGGATGACGCACAATCCCACTATCCTTCGCAAGACCCTTCCTCTATATAAGGAAGTTCAT TTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCGGTTTAA ACTATCAGTGTTTGATGAGAAATCTGAAGATCAGACGAGTTATTATTTGTCAACAGAGAT GATGAAGAAGGTAAGCTTCATGGCTGCACCAATGGTGGCTGTGGCTGCTTCTCAATACCT CCTTCAAGTTATCTCCATTGTTATGGCTGGTCACTTGGACGAGCTTTCTCTCTCAGCCGT TGCTATTGCCACTTCTCTTACCAATGTCACCGGCTTCAGCCTCATCGTAAATTCCTCCTC CTCCTCCTCCTCCTTCTCTCTCGACTTATAGACCTGTCCAAAGGACAAACATGCTAAGCA AAAAATTAGGGTCGCCAAATTTTTTTTATTTTTAAATATTAATGCAACTTCACTTTTTTT AGTAGTTATATCTTTAGGACTACCAATTTTTTGTTTTGATAGAAACTTACACCTTTTCAA AGTTATGGGAGTGTACACATTTCTTGTTTCATAACTAGGACCACTATTTTTATTGGACCG ACTTTGCTGACTTAGATCGTTAGTTTGGATTGGCAGGTGCGTTAGAGACACTGTGTGGTC AAGCTTTTGGAGCTGGGCAATTTAGGAATATCANTGCATACACTTA |
| GenBank Accession | HG968597 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:24909271 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F4N21 |
| Hit Gene Code | At1g66780 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | MATE efflux family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | BX572120 [GenBank] |
Gene hit At2g05890
| Sequence (A. th genome BLAST matches underlined) | >04-K013757-022-025-D01-8409 ACAAACTAATCTAAGACTACTAAAAATGTAATAAAAATGTTAGTATGATAAATAAATTAA TGAATTGTACATCAGAAGATGTGAGGACTTCCTTGATTGTTTCGCCTTGGATAATCACCA TCGTCATCCCCAGTTCTTGGTGCATAGAGCCTCTTGTGAAAAGATCCAGAACTTCCCAAA GTTAACCCATCAGTTGGTATGCTATATATCAAGAAAATATAGTTTGCTTAATATTATGTA TAAAAAAATATATTTAGTGACAAATAAATACAATTACCTTTGCTTAAAAAGATCCAACTC AGCCAACGTGGGATCCACGAAGACTTGTGAAACATCAAAAAAATTGGAAACACTCCTATG GGATCCTCCC |
| GenBank Accession | AL762506 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr2:2254810 - go to primer design |
| BLAST e Value | 5e-164 |
| Hit Clone Code (BAC ID) | T6P5 |
| Hit Gene Code | At2g05890 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | |
| Insertion Classification | TS2TE |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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