SimpleSearch - Line and FST details


Line specific information

 
Line ID 025F04
Vector Used pAC106
Line Availability available as T3 set from NASC (N402368)
Segregation Analysis 50:46:43
Confirmed for Hit At4g03110
Parent of DUPLO pair 12092
Parent of pair(s) none

Gene hit F14L17

 
Sequence (A. th genome BLAST matches underlined) 
>30-K013757-022-025-F04-8409
AATTGCAATACTTTCTGTATACGGAAGCATAAATCCCTATATCATAGAACCCAGTAAAAT
GGAAAAAAACTGAAATAGTTTATGGTTTTACTTGCAAGCATATAGATCAAGATTTCTTGC
AAACAACAACTATCAGATTAAAAGCTCTTTTTCTTCTCTTATCAGAGAGTTGAAAGAACA
GCACACAACTCACATAATATAGCCTCTTTGCTAACAAATGATTGAAGCGAATATAACCAA
CTATTTTATCAAATAGTGTAGAAGAAACTGAAAAACCCTATGGGACCCTCCCTATTGAGA
GCTTGCAACGNAAGTTCTAGACATGTACTGCACTTTTTTGGATCCACATGAGGACTCCAC
T
GenBank Accession AL762530 [GenBank]
Graphic View Graphic view of sequence AL762530 of line 025F04
Predicted Position of Insertion Chr1:4889881 - go to primer design
BLAST e Value 2e-49
Hit Clone Code (BAC ID) F14L17
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At4g03110

 
Sequence (A. th genome BLAST matches underlined) 
>30-K013722-022-025-F04-8409
TGAGATATATGCGAAAGAAACACTTTTGGTTTACTCTTTAATAGAAGCAAAATGTTAGTT
TGATCCTTGTTCTTATGGAAACCTGAAAAATGTTGGCATTAGTGTTTTTTTACCATGGTT
GTTTCAGTGTGTTCTTCGGCCTTTTGACTGTAACATTTAGGATGCTTAGATCCTTGTCAG
GTCTCTAACTAACTTTTTCTTTTGGTTGCTCAGGCTAACAGTCTATTGCAAGTAAAGTAT
GCAGATGGCGAATTAGAAAGGCTATGGGATCCTCCCTTAGGTGAG
GenBank Accession AL762529 [GenBank]
Graphic View Graphic view of gene At4g03110
Predicted Position of Insertion Chr4:1378415 - go to primer design
BLAST e Value 5e-130
Hit Clone Code (BAC ID) T4I9
Hit Gene Code At4g03110 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RNA-binding protein-defense related 1
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37