SimpleSearch - Line and FST details
Line specific information
| Line ID | 028G12 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N402676) |
| Segregation Analysis | 50:30:18 |
| Confirmed for Hit | At1g20200 |
| Parent of DUPLO pair | 208 |
| Parent of pair(s) | none |
Gene hit At1g20200
| Sequence (A. th genome BLAST matches underlined) | >95-K013762-022-028-G12-8409 TATTGATCCAATGTAGATTTCCCGTACATGAANGCCTGTAGATTTTCCGGACAGGATATA TTGGCGGGTAAACCTAAGAGAAAAGAGCGTTTATTAGAATAATCGGATATTTAAAAGGGC GTGAAAAGGTTTATCCGTTCGTCCATTTGTATGTGCATGCCAACCACAGGGTTCCCCTCG GGAGTGCTTGGCATTCCGTGCGATAATGACTTCTGTTCAACCACCCAAACGTCGGAAAGC CTGACGACGGAGCAGCATTCCAAAAAGATCCCTTGGCTCGTCTGGGTCGGCTATGGGATC CTCCCTATAGTGAGANGAGGANANANAGGANNCCCCACGAAAAAAACCTTGCTAAGCATA TGGCTGAGGACCACGATGATGATTTTTAGACACCGGTCATCTATTTCTTATAAGAGTTGC CTCTCCATCTGTCTCAATCTTTTTATGTTCAACAAGTTTACTCGGGACTCTTGTCGTCGT TTCTAA |
| GenBank Accession | FR800723 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:7001739 - go to primer design |
| BLAST e Value | 2e-39 |
| Hit Clone Code (BAC ID) | T20H2 |
| Hit Gene Code | At1g20200 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | PAM domain (PCI/PINT associated module) protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit T7M24
| Sequence (A. th genome BLAST matches underlined) | >95-K013763-022-028-G12-8409 ATTGATCCATGTAGAATTTCCCGGACATGAANGCCTGTACATTTTCCGGACAGGATATAT TGGCGGGTAAACCTAATAGAAAAGAGCGTTTATTATGAATAATCGGATATTTAAAAGGGC GTGAAAAGGTTTATCCGTTCGTACATTTGTATGTGCATGCCAACCACAGGGTTCCCCTCG GGAGTGCTTGGCATTCCGTGCGATAATGACTTCTGTTCAACCACCCAAACGTCGGAAAGC CTGACGACGGAGCAACATTCCAAAAAGATCCCTTGGCTCGTCTGGGTCGCCTATGGGATC CTCCCTATAGTGAGAGATTTGNCCCTCCCATATCACGGGAGATAAATATCTTTGGGCCTA TCGAAGATTTGATACTGAGAAATGCGTGGCCACGCTCAAACGATGTGAATGTCAGTCGGC CGTTCTATCAGTATAAATCCGAGGGCCATGAAACATGGTCTAGCAGAATCAGGATGACCC GTGTCCAGCCCTACTCCTGGATCGAGAAATAGACACAAAAGCATTATGGGAATAGAT |
| GenBank Accession | AL762867 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:1754723 - go to primer design |
| BLAST e Value | 7e-52 |
| Hit Clone Code (BAC ID) | T7M24 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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