SimpleSearch - Line and FST details


Line specific information

 
Line ID 038C07
Vector Used pAC161
Line Availability available as T3 set from NASC (N403583)
Segregation Analysis 100:88:59
Confirmed for Hit At2g46400
Parent of DUPLO pair none
Parent of pair(s) 1384
Note

Gene hit At2g46400

 
Sequence (A. th genome BLAST matches underlined) 
>51-K015215-022-038-C07-8409
NTTGTGATCCATGTAGCATTTCCTCGGACATGAAGCCTTTACAATTGAAAAAAAAACAGA
GGAATCTTACACATGAGCACAGTTTGGAACTGAAAGAGAGACAAAAAACCAATCTTTTAG
CTCAATTTACCTCTTTTTGAAGACGTTTTTAGAATCTTTTCCATCGATCTCAAGGCTTCG
CTTAAGGATGTTCTTGTCTTGGTTGAAGCTCAACATGAAAATGGCATTCTGGTAAATACG
GAGGATATCACAGATCAAGGTTTTGTTGGAATCGACAGAAGAAGTGTGTTTGAGATTGTT
CATCAATCGGTTAGCAAGCTCTTTCCCTATGGGATCC
GenBank Accession BX649667 [GenBank]
Graphic View Graphic view of gene At2g46400
Predicted Position of Insertion Chr2:19044442 - go to primer design
BLAST e Value 1e-145
Hit Clone Code (BAC ID) F11C10
Hit Gene Code At2g46400 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation WRKY DNA-binding protein 46
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At4g19510

 
Sequence (A. th genome BLAST matches underlined) 
>51-K030267-022-038-C07-8409
TACCAGAAGAANTAAACCNNCTGTAGATATGATGAAAGGAATCCTAGNGAAGA
GenBank Accession FR801075 [GenBank]
Graphic View Graphic view of gene At4g19510
Predicted Position of Insertion Chr4:10635729 - go to primer design
BLAST e Value 5e-05
Hit Clone Code (BAC ID) F24J7
Hit Gene Code At4g19510 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Disease resistance protein (TIR-NBS-LRR class)
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 159D11


Last Updated on 10.06.2021 13:37