SimpleSearch - Line and FST details
Line specific information
| Line ID | 040A09 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N403753) |
| Segregation Analysis | 100:97:74 |
| Confirmed for Hit | At3g60130 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 1423, 5942, 5946, 5956, 69892, 69930, 69969, 70008, 70011, 70026, 70030, 70031, 70032, 70035, 70038 |
Gene hit At2g06540
| Sequence (A. th genome BLAST matches underlined) | >65-K030269-022-040-A09-8409 TGGATCACATGGATCCTTCAAGTATGGGATCCTCCCTATAGTGAGTCGATATTACTCATC CTCCAGTACGATCATCCCAATCATGAAACGTATTGTAAACCCTGCGTCTCAGAAACAGAA ACCACTGATCATCTCTTTTTCACATGCCCTCATGCAATACAAATTTGGCGGGCATCGGCA ATACCCATCCATGAACTCACTGATTCCCAGATCAGCTTGGAGACGAAAATGACGGCTCTA TTTGAATGGCACCAAGAAGTATGGGATCCTCCCTATAGTGAGTCGAATTACTCACTCCTT ATTACAATTACCCTTTCTAATATCCCTTTTTACATATNNANTTTTAATTTAAAAAT |
| GenBank Accession | CR934355 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:2593383 - go to primer design |
| BLAST e Value | 6e-85 |
| Hit Clone Code (BAC ID) | T12H3 |
| Hit Gene Code | At2g06540 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | |
| Insertion Classification | TS2TE |
| Confirmation Status | unknown |
Gene hit At2g36970
| Sequence (A. th genome BLAST matches underlined) | >65-K030254-022-040-A09-8409 TGGATTACAAAACTAAGGCAAACCACACCTAACGCTCTCTAGAATTGAATTCCATCCACA ATGTGTGAAAAACCCTCCCACGGCCGGATTTGAAATAACTTCCATCTGGCAGCACCATTG GACCACAAGACCTCGATCTTGGGCTTGGTCCACAAACCCGGCTGGAAGAAAATCTGGTAT GGGATCCTCCCTATAGTGAGTCNTATTACTCACTCTTTTT |
| GenBank Accession | CR934354 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr2:15530506 - go to primer design |
| BLAST e Value | 3e-87 |
| Hit Clone Code (BAC ID) | T1J8 |
| Hit Gene Code | At2g36970 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | UDP-Glycosyltransferase superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At3g60130
| Sequence (A. th genome BLAST matches underlined) | >65-K015218-022-040-A09-8409 TTGATCCATAGTAGATATCCCGGACATGAATGCCTTTACAGTTGTTAACATACATACAAA AAAGAACCAAGTGGACAAAAGAATAAGAACTAAACCTGATAAGCAGAAGTAGCAGATCCA AAAACGAAATCTTGTGGGAAATCATTTCTTCTTAACCTATGGGATCCTCCCTATAGTGAG AGGAAAAAAAGAAAGAGTATTTACCAATTTTTTTTTAATTCAAAAATGTAGATGTCCGCA GTGTTATAATACNCCCACCCCCCTTTTTTCCCACATAACATTCCAACCTTCAACTTCGCG GACCCCCTACCCCCCCCACACCGGTAAAAAACACCGTAACCCCCACAAATCACCCTCTCC CCCCTCCTCACTAACCTCCCCCCCACCACCCCCCCCCAAACACAATGGACCCACCCTCAA GCAACAAGCGGCGCAAAATCCCTGCCCCCCCTAAGATAATATCCATTTTCCATCTGACCA GGACCCCCCCGGTGTTCTCGAACAATTAGCCACCCCACCCGCCCACCCTTTTTCACCGAC CCCCAACCACCCTTAGACATCAATGACACCCATAATACACGGTGACACATCAAACAC |
| GenBank Accession | BX649668 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:22210541 - go to primer design |
| BLAST e Value | 2e-52 |
| Hit Clone Code (BAC ID) | T2O9 |
| Hit Gene Code | At3g60130 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | beta glucosidase 16 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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