GABI DUPLOdb - pair details


Details for pair 1423
  
  Pair Info Parent 1 Parent 2
Pair ID 1423    
Parent loci   At1g51490 [Araport] [TAIR] At3g60130 [Araport] [TAIR]
Gene Annotations   beta glucosidase 36 beta glucosidase 16;
Pair-related paper(s)  
Similarity (TAIRv10) 56.9 %    
Gap (TAIRv10) 13.8 %    
Component 43    
Genetically unlinked Yes    
Assigned allele   161G03 / At1g51490 040A09 / At3g60130
Insertion classification   CDSi CDSi
Parent line's graphic view   Graphic view of gene At1g51490 Graphic view of gene At3g60130
Parent line's confirm. status   confirmed, show confirmation seq's confirmed, show confirmation seq's
Primer and wt-amplicons   show primer details show primer details
Doublemutant ID 1423/1a1.43.2
NASC set ID N2102822
Assigned allele   161G03 040A09
Allele genotype in parent1   Hom  
Allele genotype in parent2     Het
Allele genotype in DM1   Hom Hom
Comment(s) and/or quirks Not a true DUPLO pair because the two ORFs display an aa-sequence similarity below our threshold, or at least one of the two genes has no annotated ORF (e.g. transposable elements or pseudogenes).

 


Last Updated on Thursday, 06 December 2018 16:11