SimpleSearch - Line and FST details
Line specific information
| Line ID | 042B09 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N403957) |
| Segregation Analysis | 50:28:24 |
| Confirmed for Hit | At1g16830 At1g16840 |
| Parent of DUPLO pair | 2305 |
| Parent of pair(s) | none |
Gene hit At1g16830
| Sequence (A. th genome BLAST matches underlined) | >81-011515-rosso-b9-35St TTGCGTAAGGGATGACGCACAACTCCCCTATCCTTCGCAAGACCCTTCCTCTATATAAGG AAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTT CGGGAAACCACGATGACGCGGCGGCGAAACGGCCTTTGGATAGAGAAAGTGAACGAGAGA GAGATCGATCCTTTATTGTCGTTACCCAATAATTGAATATTGAATATTTCAAGTAGTTGG ATTGATGATTTGTAGTGGAATCTCTGTATCTGTTAATGTATGGAGCATGTTGGTTAGCGG GTTTTTTCGTTCAGGAGAGCCGCAAAAGGCGGTTGATCTGTTCAATAAGATGATTCAGAT TGGTTGCTCACCTAATCTTGTGACGTATACTATGGTATCTATACTGTGGGGGGGATACTG AATGGNTGATGAAGCGTTTACCGTGCAACATCACATATGACCTTGAGAATTTTTCTACCG TACTCGGCGGAACACGCGCTTACCTCTCGCACGCACGCCACNCCTGGTGAACGGNGTTTG CCTCTTCTCTCTTAGACTAGCTTGCGTACACCCACCGCTTCCATCCTTCAACCTGCACCT TCCTCTCTGATCGCCCTTTCTACTCATCCTCCCATGACACTCAAACGTGCTCCGTTTTTT ATTACTCCCTTGTTCACTATACTAGAACCGCACCCTCACGCACCTTGCACTCGTCCACCC GCGCTCCAACTTTTACTTCATCTCCCCCCCTCCTCACGCCCCCCGTTCACTTTACCATGT ATAACTACACATCTACTGACTGCGTGCGTCTACTTGCTCCACCCCGTCACTTCTGTCGCT CGTACTGCTCCTTCCCATACCGGTATTATTATTTTTTTACTTAAACATCCTAATCAACAA TTACATT |
| GenBank Accession | AL763882 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:5761415 - go to primer design |
| BLAST e Value | 2e-89 |
| Hit Clone Code (BAC ID) | F17F16 |
| Hit Gene Code | At1g16830 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Pentatricopeptide repeat (PPR) superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g16840
| Sequence (A. th genome BLAST matches underlined) | >68-K118628-0022-042-B09C-3144 CCTTCGCAGACCCTTCCTCTATTAAGGAAGTTCATTTCATTTGGAGAGGACAGGGTACCC GGGGATCAGATTGTCGTTTCCCGCCTTCGGGAAACCACGATGACGCGGCGGCGAAACGGC CTTTGGATAGAGAAAGTGAACGAGAGAAAGATCGAGCCATTATTGTCGTTTCCCAATAAT TGAATATTGAATATTTCAAGTAGTTGGATTGATGATTTGTAGTGGAATCTCTGTATCTGT TAATGTATGGAGCATGTTGGTTAGCGGGTTTTTTCGTTCAGGAGAGCCGCAAAAGGCGGT TGATCTGTTCAATAAGATGATTCAGATTGGTTGCTCACCTAATCTTGTGACGTATACTAG TTTGATCAAAGGGTTTGTGGATTTAGGAATGGTTGATGAAGCGTTTACCGTGCAACATCA CATATGAGTATGAGAATTTTTCTAGCGTCTTTGGTGGAACAGGTTCTTAACTAGTTGTGG TGTATGAGAATTGTTTGATTGTTGGTCATTCGTTGACATATGGTTTTTGTTTATTGGGTT TAGGTGTTCAACCTCAATTGATGGAGACCAAGACCGAGACAACTTCAAATTCCGAGTCTC ACTCTGAGGACGAGGAAGTGTAAAAATGACACTGCTTGTTTGGGTGAGTTATTTGGCAAA ACTAAAGTTATGACCTTGATGGATTGAGCAAATCACATTTCTATCTATATCCATGAATCC TCAAGGTCTTATGATTTTGTTGGGTTTCTGATAAAAGAAAGATTGAAGCTTGCAGGCTCT TCAGGATCTCTTGTCAAGACCAAGAGCTGCCGAATTCGGACAACCAAGAGCAAGTGAAA |
| GenBank Accession | HG968633 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:5763292 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F17F16 |
| Hit Gene Code | At1g16840 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hypothetical protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | CR395776 [GenBank] HG968633 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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