SimpleSearch - Line and FST details


Line specific information

 
Line ID 047E12
Vector Used pAC161
Line Availability available as T3 set from NASC (N404476)
Segregation Analysis 50:46:32
Confirmed for Hit At1g53560
Parent of DUPLO pair none
Parent of pair(s) 408, 7958

Gene hit At1g53560

 
Sequence (A. th genome BLAST matches underlined) 
>92-011631-rosso-E12-35St
TATTGCCGTAAGGGATGACGCACTTATCCACTATCCTTCGCAAGACCCTTCCTCTATATA
AGGAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGGTTCAAAC
TCTTCAGTGTTGCCCACCATGGTGTGCAAATAAATACATTGACCATCAATTCTCTTGAAC
TTGTGTAGGACAAACCTTTATGGAGTTTCTAATGGGGATGATGTAACTGTGTGAGTGCTA
GTTGATATACGTGAGCAAGTAATTACATTCTACATCAACTATCTTGAGCTAAGGGCATCT
ATACTTTCGGGTTGAAATTCGAGTAACGTCGGAAAGCCTGACGACGGAGCAGCATTCCAA
AAAGATCCCTTGGCTCGTCTGGGTCGGCTATGGGATCTATACTTTCGGGTTGAGAATCGA
GTANNGNCNCCCNCCCTCCCCCCCATTTTGTTTTTTACACCCCCCACCCTATCTTTCATA
CTTCACTTCACATGATCCCCAGAACGCCCGGCTACGCAACCGTAGGAGGAATCCCTCATT
TTCCCCTTTGTGCAAAAGACAAAGAACCCCTATGATCTCCCAAACACGCCACCCGAACAA
CAGAAAACAGCCGATTTTAATACTCCACCAAACTCCAGAACATCCAAAGGAACCCGCACC
TTAATTCAACCACATTCCTTACTCCACAAAAAAGTTAATGAAAAGAGGAGAAAAAAGAAA
AAGACAGATACATAATAATATCCATATGTTACACCCTCCTTTCTGCAAAGACCCCCCACA
CTACCTCTCCCTACACCTCCTACAACCTTCCATATCCACCCCTCACCTCCTTCTCTCTCT
CTCTCTAATATACTCACAGATTCTA
GenBank Accession FR801316 [GenBank]
Graphic View Graphic view of gene At1g53560
Predicted Position of Insertion Chr1:19984906 - go to primer design
BLAST e Value 1e-31
Hit Clone Code (BAC ID) T3F20
Hit Gene Code At1g53560 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Ribosomal protein L18ae family
Insertion Classification TS2TE (3')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37