GABI DUPLOdb - pair details


Details for pair 408
  
  Pair Info Parent 1 Parent 2
Pair ID 408    
Parent loci   At1g29970 [Araport] [TAIR] At1g53560 [Araport] [TAIR]
Gene Annotations   60S ribosomal protein L18A-1 Ribosomal protein L18ae family;
Pair-related paper(s)  
Similarity (TAIRv10) 26.7 %    
Gap (TAIRv10) 57.4 %    
Component 1    
Genetically unlinked Yes    
Assigned allele   381E02 / At1g29970 047E12 / At1g53560
Insertion classification   CDSi CDSi
Parent line's graphic view   Graphic view of gene At1g29970 Graphic view of gene At1g53560
Parent line's confirm. status   confirmed, show confirmation seq's confirmed, show confirmation seq's
Primer and wt-amplicons   show primer details show primer details
Doublemutant ID 408/1a2.39.03.1
NASC set ID N2102782
Assigned allele   381E02 047E12
Allele genotype in parent1   Hom  
Allele genotype in parent2     Hom
Allele genotype in DM1   Hom Hom
Comment(s) and/or quirks Not a true DUPLO pair because the two ORFs display an aa-sequence similarity below our threshold, or at least one of the two genes has no annotated ORF (e.g. transposable elements or pseudogenes).

 

Last Updated on Thursday, 06 December 2018 16:11