SimpleSearch - Line and FST details


Line specific information

 
Line ID 052A07
Vector Used pAC161
Line Availability available as T3 set from NASC (N404903)
Segregation Analysis 50:50:5
Confirmed for Hit At3g03300
Parent of DUPLO pair none
Parent of pair(s) 3650, 3761, 9809, 95392, 95395

Gene hit At5g65070

 
Sequence (A. th genome BLAST matches underlined) 
>49-K104554-0022-052-A07-8409
CTGCATATATATTCATGCATCAACAACAGAATAGGAAAACAACTTCTATAATCAGAGGAA
AAGGGGGAAAAAGGAGTCTTAGTGCTAACCATTGGATTGTTTCTATGGGATCCTCCCTAT
AGTGAGACTATGGGATCCTCCCTATAGTGGGCTACCCTGAATTGGTAGCTCAATGGGTTC
CTCTCTATTTTGAGCTCCCCTTATTTTCTCACTCTCTGAGCCCCACTTTATCATTCTCTC
CCTTTTACGCATTGATGTATTCACTCCTTCGATAATTACCTTTCTCTGCAATTCCTCCTT
TTTTACATACGTGTTTCCATTGGGAAACGACGCATTTAGACATTTTATGGAGTCATTTTA
TCCGATGGGGGACAACGAGACGGGGGGTCCTAATTTGGGGGGTGATAGGGAGGGACGAAC
CTCTGAGAGGAAGA
GenBank Accession FR801388 [GenBank]
Graphic View Graphic view of gene At5g65070
Predicted Position of Insertion Chr5:25995205 - go to primer design
BLAST e Value 4e-43
Hit Clone Code (BAC ID) F15O5
Hit Gene Code At5g65070 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation K-box region and MADS-box transcription factor family protein
Insertion Classification CDSi
Confirmation Status unknown
Other FSTs Supporting this Hit FR801387 [GenBank] FR801389 [GenBank] FR801386 [GenBank] AL753595 [GenBank] AL753595 [GenBank]

Gene hit At3g03300

 
Sequence (A. th genome BLAST matches underlined) 
>49-K012486-022-052-A07-35St
TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAAGGAA
GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG
GTTTAAACTATCAGTGTTTGCAGTTACCATCAATCCCATTGCTGATCTATCTTCGGTTTA
GACAATTGCATCACAACATTTGCAGTTTCATACAGTCTCGTGGGCGTGCTATGGGATCCT
CCCTATAGTGAAGNCACTTACATGTGTGACCGGTTCCCAATGTACGGCTTTGGGTTCCCA
ATGTACGGGTTCCGGTTCCCAATGTACGGCTTTGGGTTCCCAATGTACGTGCTATCCACA
GGAAAGAGACCTTTTCGACCTTTTTCCCCTGCTATGGGATCCTCCCTATAGTGANNNNNN
NNNN
GenBank Accession AL753596 [GenBank]
Graphic View Graphic view of gene At3g03300
Predicted Position of Insertion Chr3:771655 - go to primer design
BLAST e Value 2e-12
Hit Clone Code (BAC ID) T17B22
Hit Gene Code At3g03300 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation dicer-like 2
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL753596 [GenBank]


Last Updated on 10.06.2021 13:37