SimpleSearch - Line and FST details
Line specific information
| Line ID | 054D03 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N405127) |
| Segregation Analysis | 50:40:47 |
| Confirmed for Hit | At1g49890 At4g35830 |
| Parent of DUPLO pair | 2332 |
| Parent of pair(s) | none |
Gene hit At1g49890
| Sequence (A. th genome BLAST matches underlined) | >20-K012357-022-054-D03-8409 TTGATCCATGGTAGATTTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGACAAT TGAGCGATGAGTCTGATGATCAATATACATCTTGTGCCATTCGGATGAGGAAACCACCGG GTACGGTAAATCAAATCTGTCGGTTTAACTTGCGGCTAAAGAGCGGAAGTTACTATACTG TATTGAGTACATCTCTTCATAACATTATGTAGAGGATTGCTCGATACTTAATACATTCAT CTGCGGGGAATTGTAACTTGAATGCCAAAACCGAAACCCTAACTCGAGCGCGGCGACTTC AAGCTTCACCGACTCAGGCTACTTTGTCTATGGGACACTGCCTATTCTGAGTCGATGGAC TCAGCTTACTTTAAAGGGGCTAACGTCCTATATAAGACGTTATCTTCTGCTTCTATTTGT GAGGAATACGACTGATATTCTGTGGAAATGGGCTTACCGATTCCTTCTTGCCGTAATAAG ACAATCAAGTTTTGCGAATAACTCAATTATTGTAGAATGGTAATTGTCTCGCAACGTGTT GAGCAAATGAATGCAGGACTCTAATAATTTATATATGTGGGGGAGGCAGACTTTATATAT GTACCTCTA |
| GenBank Accession | FR801761 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:18471940 - go to primer design |
| BLAST e Value | 2e-64 |
| Hit Clone Code (BAC ID) | F10F5 |
| Hit Gene Code | At1g49890 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | QWRF motif protein (DUF566) |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL754428 [GenBank] AL754428 [GenBank] AL754429 [GenBank] FR801761 [GenBank] |
Gene hit At4g35830
| Sequence (A. th genome BLAST matches underlined) | >20-K012297-022-054-D03-35St TGACGTAAGGGATGACGCACTATCCCCTATCCTTCGCAGACCCTTCCTCTATATAGGAAG TTCTTTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCGG TTTAAACTATCAGCATTTACAATTGTAAATGATCAGCATGTCTTAATTGAATATGATTCA ACGGATATAGAGAAGAGGCACATATCAGATTGGTGGATTATAAGTTTGTGAAAATAAAAT CATGATTGAACAGATATAATTCACTTGATACAAAAAAAAGCAAAGAATGGATATTCACAA AAAAAAAAGGTGGGTTATTTAAAAAATTGAATTTTAAATTAAAATTAAAATTCAACCGCC CTTCATTTTTAACAAAAAAACCCCCCCACGGTTCTGCCAAATTTTTTCCTTTTTTACATA AAAAAAAAATTTAATTGGGTTAAGGCTCGGGTACCCTCCCCACCTCCGTTAATAACCTTT CTTTTTTTGAAAAACAGATCTCTCTATTTGGTTTCTTCCCTCGACTGGGATCTTTCACCC TGGGGTTTCGATTTATCTGTTAACAACCCAAAAGGAACCAGGGTTCCTTAATTCTTCTTC TCCCCGAGGCTGATTTTCCA |
| GenBank Accession | AL754426 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr4:16978334 - go to primer design |
| BLAST e Value | 3e-57 |
| Hit Clone Code (BAC ID) | F4B14 |
| Hit Gene Code | At4g35830 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | aconitase 1 |
| Insertion Classification | Promoter |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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