SimpleSearch - Line and FST details


Line specific information

 
Line ID 055A02
Vector Used pAC161
Line Availability available as T3 set from NASC (N405186)
Segregation Analysis 129:124:102
Confirmed for Hit At5g56600
Parent of DUPLO pair none
Parent of pair(s) 743

Gene hit F10C21

 
Sequence (A. th genome BLAST matches underlined) 
>09-K012479-022-055-A02-8409
TTTGATCCATGTAGAATTTCCCGGACATGAANGCCATTACAATTGAATAAATCCGAGAGG
ACGACTGCCCCATATACACAAAATAAAAAGATCTTGGTGCGTAATCATACCAACAATTAC
AAGATGTCTGGCTTCAACTTTAGAACAGATACGCATGGGATTCGTGCCTATTGAGAGCGA
CCTATGGGATCCCCCCTATTTTAAATACAGAAGATTAAAAAATAAGATCAAAATATAGTA
GACCTCATTGTCTAAATCCAAACCAGCATGTCATGCAACCATCACATCTTCTATCCCCTT
GGTTTTGAATGGATGAAATTCTATTTCTAACTTGCTTATCAAGAAAGCGAGTCAATTGAG
CTGCGGGCTGTGGCACTTCTCCATGTCGACGGCCGTTTCACTCTTTCCGTATATAGTGTA
AAGTGAGCTGAAAAGTGTATCTCGTAAAGAACAGGAGCTCATGTCCGAGCTATGGGCCGT
GGTCTCACTATGGGATCCTCCCTA
GenBank Accession AL754624 [GenBank]
Graphic View Graphic view of sequence AL754624 of line 055A02
Predicted Position of Insertion Chr1:12166228 - go to primer design
BLAST e Value 4e-152
Hit Clone Code (BAC ID) F10C21
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At5g56600

 
Sequence (A. th genome BLAST matches underlined) 
>09-K012470-022-055-A02-8409
TGATCCATGTAGATTTCCCGGACATGAANGCACTTACAATTGCGGCGGCGGTGAGGCGGT
TGCCTGCAACATCGCACATTAAGTGATCGTCGACGTAAGTCTGCCACGACATGTTTGTTT
TCTTCTTCTTCTTTACTTTTGCTCTGCTTCTTCTTTGTGGTTTATCGGAATGTTCTATGG
GATCCTCCCTATAGTGANGNNNNGGANCTGNNAACCTGATCCGTATGATCGTGAGGGGAA
AAGAAGCAAAAGATCCATTAGAACAAACTACACACCCAGCTTGCACGCAACTCTAACAAA
AAAGATTTGACCTCAGGAACAATACAACCTACTTGCACTGGACCGGGCCCCCCCTAGAGA
TCAATCCACCCCCATCACATGTATAAAACAGACTGAATCTGACGCTCATAGCAGCCGTCA
TCTGAAAACGACAT
GenBank Accession BX649681 [GenBank]
Graphic View Graphic view of gene At5g56600
Predicted Position of Insertion Chr5:22910636 - go to primer design
BLAST e Value 1e-37
Hit Clone Code (BAC ID) MKN22
Hit Gene Code At5g56600 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation profilin
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX649679 [GenBank] BX649681 [GenBank]


Last Updated on 10.06.2021 13:37