SimpleSearch - Line and FST details
Line specific information
| Line ID | 055H05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N405273) |
| Segregation Analysis | 100:99:74 |
| Confirmed for Hit | At5g15320 At5g15340 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At5g15320
| Sequence (A. th genome BLAST matches underlined) | >40-K012426-022-055-H05-8409 TGATCCATGTANGATTTCCCGGACATGAAGCACTTTACAAATAATATAGTGTCCTATTTA TACTACGATTACATATTTATTATTTCATTATGAAATATTGGCTTGGTCTTTTTTTTCGGC TTTTGTGTTTCTTATATTATTTTCACAATTAATATGAAAAAAATGAAAAATCGGATTCGA GAGAGAGAGGCAAAGCCCAAGGCAGAAAAGGACATGAAACAACCAACATTTAATTTTCTC ATATAGTAATCGACATGTCAACGTGTTGTTTTTATCACATCCACATTATCATCATGTAAC TCTCAATCTTTCACATTTCTTACGTAGTTAACAAAATAAAATAAAATAAAATTGACCACA GTATATGTATACTTTCTATGGGATCCTCCCTATAGTGAGTCGATTTNACTCANNNGNNNN ANNNNGNNNAANNNGGANCGNACAAAAACTGGGNNCAAGATAGATTTTTTTAATCCGGGG GACGGTTGATATGTAGTAATCGTGTTCGTCAGAGAACATTCAATATCTTGGATCTTAATG AATCAAAAAGAAACGATTCGGCCACTCAAGAATGACCAAAAATGTCTTCAAGTGGCCCGA GACCAATGCTTTGCAGCAACCCTTTCATGGCGAAAGACGCCCATGAGAGGAGGGGCTCAT GCATGTTTGAAGGTAGCTTTAACTTAAAGCCTCTCGGGGCCAATTTCTCCTCCGGAAATA TGAAAACACCTTTGAATCTCTATGGGACCCCCCCTATAGGGGGCGGAATACCCAAAAGAG GAGGGGGGCCGACAGGCCAACCTCTCCCCTGTCTGAGGGGGGGCGGGGGCCCACGTTCTG AGCCACCCTNGGTCGGTCCACGAGGACAAACAAAAAACCCCTCTCTCTCTTT |
| GenBank Accession | AL754894 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:4977253 - go to primer design |
| BLAST e Value | 3e-112 |
| Hit Clone Code (BAC ID) | F8M21 |
| Hit Gene Code | At5g15320 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | ATP synthase E chain |
| Insertion Classification | Promoter |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL754892 [GenBank] AL754893 [GenBank] |
Gene hit At5g15340
| Sequence (A. th genome BLAST matches underlined) | >40-K012296-022-055-H05-35St TGGACGAAGGGATGACGCACAATCCCCTATCCTTCGAAGACCCTTCCTCTATATAAGGAA GTTCATTTCATCTGACCCAGCAACCCCATGTCCTTGTTGAGCGAAACCCAAATCCTCCAG CTTGGCACACACGCCAAACAAACAAACTACAGAAACATCATCAATCTCTACTCTTTTCCT TCTCATTTCCACGAAGAGCTTCATCGAATTAACCAACAATCCATACCGAGAAAAAGAGGA TAACAAAGTGGTCCAATCCACATTGTCTTTTTCTGAAAGAGGAATTTCGTCGAACAGTTT CTGGGCAGTAACCATTTCACCAGAGGAAGCATAAAACTGAAATAGCGCATTGCTAAGATA CGACCTGGGAGCTTTCTTCAATCCAGAAGTGGTTAAAACGGCGTGCAATTCCTTGCCGGG ACGGAGAAACGAACGGTGAGCGCAATGTCGGAGAAGGAGACGAACTTTTTGGTAGGATAA GCATTTCATAAGATTAAGCTCGTCCCTTTAGTCCTATAACTGATAGAATCTTAGAGCTAT GGCGTTAGATCTCTGCCTTCGACGGTTCTAACTTCTCGTGAGTTCAATTTTCCCGGGAAA CAAACAGAAAATCTGGGCTCTTAAATACACTTCACGCGCCTTGATGAGAAATTTAGAGCG CGTGGGATAAATGTTTTTAATCTTTTGTCCAGTACATCATAAGTGACATAATAAAGGTTT TTGGGTTTTGATCTGCAAGGATGCAATGATTCAATAGAAACTATGGGAT |
| GenBank Accession | AL754891 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:4983733 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F8M21 |
| Hit Gene Code | At5g15340 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Pentatricopeptide repeat (PPR) superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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