SimpleSearch - Line and FST details
Line specific information
| Line ID | 076B01 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N407213) |
| Segregation Analysis | 100:92:67 |
| Confirmed for Hit | K18I23 At3g55120 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
| Note |
Gene hit At5g05310
| Sequence (A. th genome BLAST matches underlined) | >02-011920-strizhov-B1-8409 TTGATCCATGTACTATTCCCCGGACATGAAGACCTTTACAATTGAATATATCCTGTCGTA CCTGGGGGACTCTTATAATATAATGAAATGGACTCAATCGTAAATGGCTTTACTGTTGAA CAGTTGATGCCAGAAACCCTAATCTACTAATTACTCGTTCACTTTACTTTACCGGCGCCA TTGGACGAGACCCTGAGTACACTCTTTACAGATCTTGATTTACATGAATGTTTCTTTTTT TTCTTAATAAAGCCTAACCACAGAGCATTATTGGAAAAAAAACCCTTGAATCTTCTCCCC CGGCAATAGTATCCTCCTTACACACTCTTTTTTTTTGGCCCCTGGGAAACAAGCGAAAGC CTTGGGGAAAACAACCCAACTTAAGGTTGGGTTCGGTTTTTTAAAAGGGTGTTAGCAAAA AACCAACACCTTTGGGGACCCCTTTAAGGGGGGAAACNNCCCTATCTGGTCCAAGCACAA AGAAAAAAGAGTTTCATCATATATCTGACTTGATGGACTGTTCGGAGTTAGGACCCAACA TTATCTACTAACCAAGACTTTTCTGCATACTTGGGATTCCTTCTTAAAC |
| GenBank Accession | AL768570 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:1574677 - go to primer design |
| BLAST e Value | 2e-36 |
| Hit Clone Code (BAC ID) | K18I23 |
| Hit Gene Code | At5g05310 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | TLC ATP/ADP transporter |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | confirmed, show confirmation sequences |
| Other FSTs Supporting this Hit | AL768568 [GenBank] |
Gene hit At3g54350
| Sequence (A. th genome BLAST matches underlined) | >02-011920-strizhov-B1-8409 TTGATCCATGTACTATTCCCCGGACATGAAGACCTTTACAATTGAATATATCCTGTCGTA CCTGGGGGACTCTTATAATATAATGAAATGGACTCAATCGTAAATGGCTTTACTGTTGAA CAGTTGATGCCAGAAACCCTAATCTACTAATTACTCGTTCACTTTACTTTACCGGCGCCA TTGGACGAGACCCTGAGTACACTCTTTACAGATCTTGATTTACATGAATGTTTCTTTTTT TTCTTAATAAAGCCTAACCACAGAGCATTATTGGAAAAAAAACCCTTGAATCTTCTCCCC CGGCAATAGTATCCTCCTTACACACTCTTTTTTTTTGGCCCCTGGGAAACAAGCGAAAGC CTTGGGGAAAACAACCCAACTTAAGGTTGGGTTCGGTTTTTTAAAAGGGTGTTAGCAAAA AACCAACACCTTTGGGGACCCCTTTAAGGGGGGAAACNNCCCTATCTGGTCCAAGCACAA AGAAAAAAGAGTTTCATCATATATCTGACTTGATGGACTGTTCGGAGTTAGGACCCAACA TTATCTACTAACCAAGACTTTTCTGCATACTTGGGATTCCTTCTTAAAC |
| GenBank Accession | AL768570 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr3:20122322 - go to primer design |
| BLAST e Value | 1e-37 |
| Hit Clone Code (BAC ID) | T12E18 |
| Hit Gene Code | At3g54350 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Forkhead-associated (FHA) domain-containing protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
Gene hit At3g55120
| Sequence (A. th genome BLAST matches underlined) | >02-011889-strizhov-B1-8409 NTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATATATCCTGAAGCC CATTGGGGACTCTTTACTATAATGAAATGGTCTGAATCTTAGATGGGTTTACTGATGACC AGCGGCTCCCAGATACCTTAATTACCTCGCTTGTCCCTCTCTGTACTCTGCCGGCGCCGA TGGTAAGATCCTTGTTCACTCTTTCCCGATCGTGCCGTACATGAAGGCACCGGCCTCCTC CAATCCATTATTCCTCGGCGGCGCCGGTTCGGTAGTTCGCTCTGTACTTCTTTATCTTCT TCTTTTTCTTCGAGTTGCTGACTACTTTCCGTTTTGCTAACTGACGCAGGCGACCGAGGC CTGGATATCCAACGTAAATTCGTGATCTTCACCGTCATTGATATCCATGTTAGCTACAAA ACAACAGTAACTGTGGCCAACTTAGTTGTGAAACAACACTATACTGGTCGAAGCAAAAAG AAAAAAGAGTTTCATCATATATCTGATTTGATGGACTGTTTGNAGTTANGACCAAACATT ATCTACGAACCAAGACTTTTCTCCTAACTGGGGATTCCTTCTTAAACCCTATGGCATCCT CCCTATAGTGAGTCGTTTTACT |
| GenBank Accession | AL768568 [GenBank] |
| Graphic View |
|
| Predicted Position of Insertion | Chr3:20431490 - go to primer design |
| BLAST e Value | 9e-67 |
| Hit Clone Code (BAC ID) | T15C9 |
| Hit Gene Code | At3g55120 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Chalcone-flavanone isomerase family protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
