SimpleSearch - Line and FST details


Line specific information

 
Line ID 079C01
Vector Used pAC161
Line Availability available as T3 set from NASC (N407513)
Segregation Analysis 50:48:26
Confirmed for Hit At2g44190
Parent of DUPLO pair 12129
Parent of pair(s) none

Gene hit At2g44190

 
Sequence (A. th genome BLAST matches underlined) 
>03-011917-strizhov-C1-8409
TTTGATCCATTGTAGATTTCCCGGACATTGAAGCCTTTACAATTGCTCTAAACGTTCATA
AATGTAAAAATAGTGTGAAATCTACGATATTTAAGATCTTTACTTACTTGTGACTCTACA
ATCTCCGTAACAGCTTTAACTCTCTGTAAATGTTGGAGTTCTATGCGTTTCCTCTGTACA
GAATCAGACAACTCCGACATTTTCAAACCAAGTGAATAAAACATTCTCTGCAAGAAAAAC
AATTTACAGCATCCATAAGATCACCATCATCAAACAGAATCTAACCTAAACAACATTCAT
CACTAATACTGAAGTTATGTGTCAAACATTGATCTATATGTAAAAGCTATCAAATTTCTG
ATTCTCAGAGCTATAGAAACTGACCTCAGCTTGTGCTTTCTGAGATTGTGTTTTGACCTC
AGCATTTGCATTTGCAAATCGCCATTGCAAGTAACGGTTATGGAGCAGTTTCAGAGAATG
CACATCCGCTTGTTGTCCTAAAGCTTTCTTCTGCTTCTTTGTATCGGCTTGAATCTTCGA
ATTAGGAGCCACCGGAGGCANTGACAAACCAACACCATTTTTAAGCGACAATGAAGCTCT
AACATCTCGAAACATCGACGCATCATCGGAACTCAGGGATCGAGAAAGTGGTGAGGCGGT
GGGGAATGTTAAAAGGCCTTTCTTTGGGTTCTAATTNGTGGCAACAGATCTGGGCCGGTG
GATTTGAAAACTCTCTAATGTGGGTATCTTCTTACCGTCTGTAGAAGAGATAACGAGATC
CCG
GenBank Accession AL768804 [GenBank]
Graphic View Graphic view of gene At2g44190
Predicted Position of Insertion Chr2:18273600 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F6E13
Hit Gene Code At2g44190 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ENDOSPERM DEFECTIVE protein (DUF566)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL768804 [GenBank]


Last Updated on 10.06.2021 13:37