SimpleSearch - Line and FST details
Line specific information
Line ID | 080D06 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N407626) |
Segregation Analysis | 50:46:34 |
Confirmed for Hit | At3g07340 |
Parent of DUPLO pair | 2595 |
Parent of pair(s) | none |
Gene hit F10A2
Sequence (A. th genome BLAST matches underlined) | >44-K016175-022-080-D06-8409 TGTCCTGTAGATTTCCCGGACTGAAGCCATTTTTCTCTTCTTCTTGATAAGCAGACTCAG CGTTTGCGTTCATAGCCGTGAAACGTTTGCTTGCGATACTAGGGACGCAGTATCAGCTAC ACTGAGATTCTGCCATCTTTCGTTTCCTATACCGGACAGAGTCAGATATTTGATCGGACG GTTGACATTGGTCGATAAAGTGAGCTTGTGAAGTAACACTGCGGCGGCTATACCACGTCT ATGGGATCCTCGCCTATTTTGTGATAACGGGTTAGGGCCTTGCATCATCTTCATTGATTA TATGAAGCGAAATCTTAATCCTCATTATAAAGCTTCCTTTGGAAAACCCATTGTCATTAA AGCAAAGGCAGGGGAAGATAGCACTCGTGACTCCTTTATCCTTCTGGTTGAGGTCCTCGA GCTTAAATCATAGCAAAGAGGTAGTGATTTGGCTCAAGTCATTTGGACTGTCCCGAATGT GGTGAACCATCCCGCCAATGGCATGGCTGAATACCTTATGTCTACAGACAGATCATTGGG ACGGGCGATGTGACAATAACATCCTCCGCTAGCAGTTTCTCCTCAGTCTACAAGCTCATC CTCTATTGCGAGCTTATCTCCTTCCTCAGCTGCAAGCTCACGCTGCAGTTCCGGCTCATG CTCCATATCCTTCATGGTGACCTTGAGCATATCATCCCTCTCCCCTTTAGAGAGGGATTT GACCTCAAATCCGGTTCATCTGCAATAAAAGGTACCAAGTCAGAAACTTAGAGCTAT |
GenBank Accession | AL937420 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr4:4459976 - go to primer design |
BLAST e Value | 7e-104 |
Hit Clone Code (BAC ID) | F10A2 |
Insertion Classification | Genome Hit |
Confirmation Status | unknown |
Gene hit At3g07340
Sequence (A. th genome BLAST matches underlined) | >44-K016177-022-080-D06-8409 TCACTTTTAAAACAACNACACGACTTCGAATAATTTTTGTTTCTAACTTTAANTTTCAAT ATGGAGCAGTTCTTGTCAATGAAGTTATGTCAGCGAACACCAGGCTGGACTTAACATGGA CGCTCTCTTGTCTAGGATGTAAGTACCGNCACAACANTTANTAGTAATTTANATTGACAC TACTTGAANAACAANTTACTTTTTTGTCTTTGCGAACCAAATCGTGTGTTTGTTTAAACT AATTTCTTTTGTTTTCTGACAGAAACTTTCTTTCAAGCAACAACTCTAATGCACTANTCA ACAAGATCTCAAATTAGATTCTTCAGCAGAAACGCTTATTGGGTGATCCTCACAACAAAA TATTTGCAATTGAACACCTGAAATCTTCTTCTANTAACGAAATAAACCCCTTTGGAAA |
GenBank Accession | AL937421 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr3:2342177 - go to primer design |
BLAST e Value | 2e-92 |
Hit Clone Code (BAC ID) | F21O3 |
Hit Gene Code | At3g07340 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Last Updated on 10.06.2021 13:37 |