SimpleSearch - Line and FST details
Line specific information
| Line ID | 081A08 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N407688) |
| Segregation Analysis | 50:48:48 |
| Confirmed for Hit | At5g05840 At5g19620 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 2780, 92422 |
Gene hit F14O13
| Sequence (A. th genome BLAST matches underlined) | >57-K016179-022-081-A08-8409 TATCCTGAAATTTCCCGGACTGAAGCCTTTACATTGAATATATCCTGCATATGGCGGCAT TTAGCATCGAACATCTCGATTTCCATGGACATATTTAAGTGACATTGCTGTACCCTCCAT CAGGATATCTCACTATAGATGAATTCTTTGAGCATATGATTCGATCACTATAGATAGACT AGCGTATTAATATCCTCTGTCCTATACCACTCGTCATATCTGCCTCTCATATCCTGCATA CCATATGCATATGATGACTCCCCAATCTTAGAAAGAACAAACCAAACCTACATCTTATAA CAAGCTATGGGATC |
| GenBank Accession | AL937476 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:8684023 - go to primer design |
| BLAST e Value | 2e-11 |
| Hit Clone Code (BAC ID) | F14O13 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At5g05840
| Sequence (A. th genome BLAST matches underlined) | >57-K016180-022-081-A08-8409 TGATCTGANATTTCCCGGACATGAAGCCATTTACATTGAATATATCCTGATAGGGGGCCA CTTGTGATCCTACAGAATGAATTGGACGAAAGTTGGCATCACGCTACTAAAGATAAAATA TTGAATCGCTGTAAGTAGCAACCCAACTAAAACTTGACCCACTATGGGATCCTCCCTATA GTGAGAGAGCCTGCCTATAGGGCGTGGCCTCGCTTCCTGCACACAAGAAGCTAAGGCCCA TGTACCTGAATCAACTCAACCACTGAGGACTTCGTTCGACACTATTGCAAATTTCCTCTC CCAAGGGATCGCTACTGGTTTGGTGACAATAAAAGAAGATCTTATTAGGTTGTAAATAAC TATACACTTGGTAATGGGAACAAAAGTCTACTTTGTTATAACAAAAATACTATTTGGAGA AAATCAAGTAGCAATATCTTTGTTAACAAATATATCTATTTGGGAACCAACTAATGTATA CTATGGGATCCTCCCTATAGTGAG |
| GenBank Accession | AL937477 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:1757794 - go to primer design |
| BLAST e Value | 1e-90 |
| Hit Clone Code (BAC ID) | MJJ3 |
| Hit Gene Code | At5g05840 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | replication factor C subunit, putative (DUF620) |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g19620
| Sequence (A. th genome BLAST matches underlined) | >57-K016180-022-081-A08-8409 TGATCTGANATTTCCCGGACATGAAGCCATTTACATTGAATATATCCTGATAGGGGGCCA CTTGTGATCCTACAGAATGAATTGGACGAAAGTTGGCATCACGCTACTAAAGATAAAATA TTGAATCGCTGTAAGTAGCAACCCAACTAAAACTTGACCCACTATGGGATCCTCCCTATA GTGAGAGAGCCTGCCTATAGGGCGTGGCCTCGCTTCCTGCACACAAGAAGCTAAGGCCCA TGTACCTGAATCAACTCAACCACTGAGGACTTCGTTCGACACTATTGCAAATTTCCTCTC CCAAGGGATCGCTACTGGTTTGGTGACAATAAAAGAAGATCTTATTAGGTTGTAAATAAC TATACACTTGGTAATGGGAACAAAAGTCTACTTTGTTATAACAAAAATACTATTTGGAGA AAATCAAGTAGCAATATCTTTGTTAACAAATATATCTATTTGGGAACCAACTAATGTATA CTATGGGATCCTCCCTATAGTGAG |
| GenBank Accession | AL937477 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:6625836 - go to primer design |
| BLAST e Value | 1e-28 |
| Hit Clone Code (BAC ID) | T29J13 |
| Hit Gene Code | At5g19620 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | outer envelope protein of 80 kDa |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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