SimpleSearch - Line and FST details
Line specific information
| Line ID | 083H10 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N407966) |
| Segregation Analysis | 50:26:22 |
| Confirmed for Hit | F25P17 At5g01800 |
| Parent of DUPLO pair | 1338 |
| Parent of pair(s) | none |
Gene hit F25P17
| Sequence (A. th genome BLAST matches underlined) | >80-011868-strizhov-H10-8409 TTGATCCATGTAGTATTTCCCGGACATGAAGCCATTTACAATTGAATATATCCTGACAGA GGTTAAGCCGTTTGCAGATTTGGTCTGATTTGATAGTAGAGACTTGTGTGAAGAAAAGTT GGGTGTAATGATCTACCATTGAAAGACACTGCAACAAACACATGATTTGGGCATAGTTAA CATATAACCACGTTTGAGAAAAGGATTAGAGAAAGCAAAAACAACCAAGGACTCAATGAA GACCTGTTTTTTGAGAGGAGGAATCTGAAAGCAGCTGATATGAAGGGCCTCAACGAGTTC ATTCTGGTTGTCGTAGTCTTGAAGGTAATCAATGACTATGGGATCCTCCCTATAGTGAGT CCATTCACTCAAAGACATGCCATTATCAGTCATTAACGGAACTTCTAACGTCCGTTATCA TCCGTTAACAACTTTATTAGTCAAGTTATAAATTGTGGTCATTTTAAACATCGACTTTAT ATGTGGCCATTTTAAACATGAACTAAGCGTTGATTACCATTTAAAACATGAGAAATTCGT TGACCAAGCCAAAATAAACATGTTGTCATCATTCATTAAAAGAACTTATAACATTCATTA TCACTTGTTAACGACTCTATTAGTATCCCTAAAACGACTTTGTTTTGAGAGTAATCAAAA GAAAATCGGGATTGTTTTCTAAATGAAACCCTACTCCCCAAATTTAATTTTACAACCGGT CAAACAAGACGAACAATCTTATAATGAGTCTTAATTTTGCTTCCATGATTCCTTTTAAAA ATTTAAACCAAATTTTTTAACCAAAACCCCTTTAATTGGCTTCCAATTACTGGGACTGGG AATATTTTTTTTAACAAACTATGGTTTTTGGGGTCTTGGTTAAAACCT |
| GenBank Accession | AL769138 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:10436088 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F25P17 |
| Insertion Classification | Genome Hit |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL769139 [GenBank] |
Gene hit At5g01800
| Sequence (A. th genome BLAST matches underlined) | >80-011868-strizhov-H10-8409 TTGATCCATGTAGTATTTCCCGGACATGAAGCCATTTACAATTGAATATATCCTGACAGA GGTTAAGCCGTTTGCAGATTTGGTCTGATTTGATAGTAGAGACTTGTGTGAAGAAAAGTT GGGTGTAATGATCTACCATTGAAAGACACTGCAACAAACACATGATTTGGGCATAGTTAA CATATAACCACGTTTGAGAAAAGGATTAGAGAAAGCAAAAACAACCAAGGACTCAATGAA GACCTGTTTTTTGAGAGGAGGAATCTGAAAGCAGCTGATATGAAGGGCCTCAACGAGTTC ATTCTGGTTGTCGTAGTCTTGAAGGTAATCAATGACTATGGGATCCTCCCTATAGTGAGT CCATTCACTCAAAGACATGCCATTATCAGTCATTAACGGAACTTCTAACGTCCGTTATCA TCCGTTAACAACTTTATTAGTCAAGTTATAAATTGTGGTCATTTTAAACATCGACTTTAT ATGTGGCCATTTTAAACATGAACTAAGCGTTGATTACCATTTAAAACATGAGAAATTCGT TGACCAAGCCAAAATAAACATGTTGTCATCATTCATTAAAAGAACTTATAACATTCATTA TCACTTGTTAACGACTCTATTAGTATCCCTAAAACGACTTTGTTTTGAGAGTAATCAAAA GAAAATCGGGATTGTTTTCTAAATGAAACCCTACTCCCCAAATTTAATTTTACAACCGGT CAAACAAGACGAACAATCTTATAATGAGTCTTAATTTTGCTTCCATGATTCCTTTTAAAA ATTTAAACCAAATTTTTTAACCAAAACCCCTTTAATTGGCTTCCAATTACTGGGACTGGG AATATTTTTTTTAACAAACTATGGTTTTTGGGGTCTTGGTTAAAACCT |
| GenBank Accession | AL769138 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:308070 - go to primer design |
| BLAST e Value | 2e-150 |
| Hit Clone Code (BAC ID) | T20L15 |
| Hit Gene Code | At5g01800 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | saposin B domain-containing protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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