SimpleSearch - Line and FST details
Line specific information
| Line ID | 085D11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N408111) |
| Segregation Analysis | 50:41:28 |
| Confirmed for Hit | At1g30440 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 294, 3151, 3267 |
Gene hit At1g30440
| Sequence (A. th genome BLAST matches underlined) | >84-011848-strizhov-D11-35St CTGACGTAAGGGATGACGCCACAATCCCCTATCCTTCGCAAGACCCTTCCTCTATATAAG GAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCT TCGGTTTAAACTATCAGTGTTTGTGCTCAATTAGAAGCACAAAAGAAAGACCATGGTCTC AAATCCAGACCAAAGTCTGCTCAAATCCAGACCATGGTCTTTCTTTTAAGGCAAATAGCA GCATTACTGAGTTAAACAAAGCTCATTCCTTTGTCTGACTTTGTCTTCTTTGGTCTTTTG CTAATTGCAGGTTTTGCACAACTGGACTTCCTATGGGATCCTCCCTATAGTGA |
| GenBank Accession | AL769316 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:10759570 - go to primer design |
| BLAST e Value | 2e-64 |
| Hit Clone Code (BAC ID) | F26G16 |
| Hit Gene Code | At1g30440 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Phototropic-responsive NPH3 family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit MSG15
| Sequence (A. th genome BLAST matches underlined) | >84-011847-strizhov-D11-35St CTGACGTAAGGGATGACGCCACAATCCACTATCCTTCGCAAGACCCTTCCTCTATATAAG GAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCT TCGGTTTAAACTATCAGTGTTTTTGTACAGTTAAAATTTACCAATTTATTATTGGTGTTA ATATGTAAGGATTCTTGATTCATTTGGAGAGACAGATTCCTTGTTAGCCCAAAAAAAAAA AGGTTTATGGGACAGTTTAACTTTTTCCCCATTGTTTTTGGCAACCCAAAACTTAAATTT AAAAAGCCATTTTGGATTTTGTTGGATTTTTGGACCAAAAAAATTTTAAAGGGGGTTTTT ACTTTTTTTCTTTTTCAAAAAAAAACTTTTAAGTTAAAGGGGTTTGGCACTTATTTTTTG GCCTTTTGTTTTTTTTTTTAACTTTAAATTTTTTAACCTTTTTTAACAAATTTTTTAAAG GGACTTTTATTGTCCGGGGGGCTTCCACCCAACCCAAAACTTATGGCTTTGGATTTTTCT TTAGGGCCGAAAAAAAAATACCTTTGGACTTCGCAAATTGAAAGGGGTAATGGTTTCCTT TGGGAA |
| GenBank Accession | AL769315 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:21145966 - go to primer design |
| BLAST e Value | 1e-44 |
| Hit Clone Code (BAC ID) | MSG15 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | AL769315 [GenBank] |
Gene hit At1g10430
| Sequence (A. th genome BLAST matches underlined) | >60-K020161-022-085-D11t-8409 GACATAAGCCATTTACAATTGAATATATCATGTAAATATCTGAATTTGAGTAGACTGCCC TATGGGATCCTCCCTATAGTGAGAGATCGGGCCCCCCCCCATAATTCTTGGAAAAGAATC CACCTTTTCCTTTACCTACGGGATCCTCCCTACACTGAGAGACCTCCCTTTAAACCCCAT AATCGAATCCCCCCCTCCCTCTCGCACGAGCACAGAGCCTCCTCACTTCAACCTCCAATA ACGGTTTACACTCCGTCTGCTGCTCCATCAGACTGACCATTATCTCCCTTCGACGGCCTC TTGAAAAGCCACCACCCATCCTATATACGAAACCTACGGCGGATAAACAAGATGAATCGC CGGACAATCTATCGGCCAGAGCTAATATATCCGAATCGGAGAGATCAAATCCTCCTATGG GATCCTCCCTATAGNGAG |
| GenBank Accession | BX530766 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:3430179 - go to primer design |
| BLAST e Value | 4e-58 |
| Hit Clone Code (BAC ID) | T10O24 |
| Hit Gene Code | At1g10430 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | protein phosphatase 2A-2 |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | BX530765 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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