SimpleSearch - Line and FST details
Line specific information
| Line ID | 086H03 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N408247) |
| Segregation Analysis | 50:41:32 |
| Confirmed for Hit | At5g17167 |
| Parent of DUPLO pair | 12794 |
| Parent of pair(s) | none |
Gene hit At5g17167
| Sequence (A. th genome BLAST matches underlined) | >24-K012541-022-086-H03-35St TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGAAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCAGTGTTTAAATACCCCTACGACGGGCAACACCCCTCTTTTTGGAGCAC TATGGAATCCTCCCTATAGTGAAGTCAGTCTAATTATGGATAGAATCAAACAGTGAATTC AAGTACCTTTTAATGAACAACTGTTGATGTTCGAGCTCTTGGGGAACAAAAAGACAAAAA GCTGCCATGGGGCCTGACGGGGGATGGATTGCATCCCTCATGATTAGCTTGGCCCAAATT ATTAATAATCTAAACAACATCATGCCCACAAAGCCCACTTAAGTGGACCATTATGCCTAT CACCAGCTAACTTCTTCTATAAATCCAGAGGCATCCCATGGCAAAAAGGCGGAAGAAATT CATATTAGAACGTCTTCAAGCTCCTCAGCTCGCTCTCTATGGGATCCTCCCTATAGTGAG |
| GenBank Accession | FR802638 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:5645493 - go to primer design |
| BLAST e Value | 2e-49 |
| Hit Clone Code (BAC ID) | MKP11 |
| Hit Gene Code | At5g17167 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | nucleic acid-binding, OB-fold-like protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g10770
| Sequence (A. th genome BLAST matches underlined) | >87-K011905-0022-086-H03-8409 GTGATCCATTGTAGATTTCCCGGACATGAANGCCTTTACAATTGAATATATCCGATACGC TCTATGGAATACCTCCCTATAGGGAGTTCTATTACTCACATCTGTACAACCCCCTTGAGA CATATCAAAGGATAATTATGATATTCAACAGATTCCTATTTATGCTCATTTTGCTCTCTT AATTCTCTCCCTCACAAAAATGACACTCAATAACATGACAATGGTTGGTCCTTTATAACC AATCTTTTTTGCTCAAGAAAGTCTCTATGGGATCCTCCCTATAGTGAGTCGTATTACTCA GGNNAGCTATGGGACCCTCCCTATAGTGATTCATATAACTAATATTGGTAAGCAGAGGCT CCTCCTTTCCCCGCCGCTCCATCTGCAGATCCCCTCCCTCCACGCCGTTTCCATCCCCAA CCTCTCTACCCACCCGGTTACTCGACATTAATGCCAACCTGCACATACAGCGATCTCGTA CTACACAAACCAGAACACCCCCAGCCCACCTCGAAAAACATACCGCGTTGACCGCCTCAC CAGTTCAATGCGGCGCAGTAGAACCCGCACGCATGAACACTATATTGCGACCCCAGCACC AACGACTCGCAGTGCGAAATGTACCCGCGCACCTCCCGACATAGCGTAAACACATAATCA CATACC |
| GenBank Accession | FR802637 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:3405220 - go to primer design |
| BLAST e Value | 2e-74 |
| Hit Clone Code (BAC ID) | T30N20 |
| Hit Gene Code | At5g10770 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Eukaryotic aspartyl protease family protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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