SimpleSearch - Line and FST details
Line specific information
| Line ID | 092B09 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N408757) |
| Segregation Analysis | 100:92:66 |
| Confirmed for Hit | At1g48230 At1g48220 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 362, 4723, 4730, 4744, 4755, 4826, 5794, 5816, 10437, 83890, 83896, 83907, 83910, 83912, 83913 |
Gene hit At1g48230
| Sequence (A. th genome BLAST matches underlined) | >66-012001-strizhov-B9-35St TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCAGTGTTCTATCTCCGAAATACTTCAATTTTCCACTTCCTATAACATTG ACAATGATCCATATGGGATTTTCTGGATTCGTGGCTTTCCTTCTTATTCGGGTATTCAAG GTACAGCGATTACACTTCCATTTAAGTGAATGTTACATTTGTCCACTTGTTTGGAGTATG CTACATGCTCGTCTTATGCTGAGTACTCCTTATAATAGGTAGGTAATAAGTATCTTTTTT GTGATGTAGGTTGTCTCTCCTGTTAAAATGACTTTCGAAATGTAAGCCAGCTTACTGTAT TCTTTACTTCATTTTTTTGGCATCTGTACTTTTCATAATCTCTTTCTTTTCTTAACATGT TTTCTGGACTCCAGATATGTGACATGTGTGGTGCCTATAAGCGCATTCTTTGCATCCAGT CTCTGGTAAGTCTTTGGTCCATATACTTGTGCCACATATTAGGTTTATAGATGCTCTCTG TCCTGGACTCCTATGGGATCCTCCCTATAGTGAGTCGNNT |
| GenBank Accession | BX942867 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:17806597 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F11A17 |
| Hit Gene Code | At1g48230 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | nodulin MtN21 /EamA-like transporter family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g48220
| Sequence (A. th genome BLAST matches underlined) | >66-011955-strizhov-B9-8409 NTGATCCATGTAGCATTTCCCGGACATGAAGTCCTTTACATGAAGACACTGATCCTATAT ACGGTCTAAGCTAAGGTTAGTAAAAACTGAAATGATGTACTTTAATTTTAGTATCTACCT GGGAAAGAAATTCTTGATCTGGCTGCTTAGTAGGGTAAAGTTTCTTGATGGCAGCTTCTT TACCGCTTTTAAGAACACCGTAAAACACTCTTCCATATGAACCTTTACCGACTAATACCT CTGAACTAAAGTTCTCGGTTATATCTTCCAGTTCATCCACTGGAATGGCTGGTACAGCGA TAGGCTGCATGTTAACTACTGGTTGGTTCATTGGTGGATCAGCTCTTTGATGGTGGCGTC CATTGTAACCTTTACAACGATTCAATTCCTATTAACTTACTTAGAAGCCAAAAACTGGAC AATATAAGAAAAACAAAGACAAGTGGTGCAGTTGAAATATGTGAGCTACCTATTGAGTTA TGTGCTTGACTTGGTCCGGTGTCAGCAGGATTACGAACATCCTCACTCCCACACCAGCCA AAACAGCTCATTATATTACACCCTTTTCTCACACGAGCTAACTTAACTGGTATAGTACAG AAGACAAAATGTGACAAAAGGTATAAAAAAAGGGGTTGATAGCACCTTAAGCTTCTATCT CCTACTTATGAAAGTGTAAGATAATATAGACCACAAACAGGTTTTGAAAAACCAGATTTG CCCTATCTAGACAAAAGAGAAGAGAGTAAAAGGGTAGGATCAATGATCCTATCTCTTCTT ATTACTCAGCCAATTAAATTGTCAAACACGAACAACTGAGACATTATGGTCCCTAAACCT A |
| GenBank Accession | AL769750 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:17803358 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F21D18 |
| Hit Gene Code | At1g48220 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Protein kinase superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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