SimpleSearch - Line and FST details
Line specific information
| Line ID | 097F09 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N409285) |
| Segregation Analysis | 50:49:44 |
| Confirmed for Hit | At1g32340 At3g17860 |
| Parent of DUPLO pair | 12778 |
| Parent of pair(s) | none |
Gene hit At1g32340
| Sequence (A. th genome BLAST matches underlined) | >70-012023-strizhov-F9-8409 NTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATATATACCTGTTGT GATATACTCCATTAGTGTTCAAGCCTCTTGTGCGCTTTTGTGGCTCCGAGTCCGTTTGTG CTACTTCCAGCTTCAGGGCTAAGATAAGATACTTGTAGGCATGAAGCTATGGGATCCTCC CTATAGTGAGGCGTATTACGACACGCCATGAGAGGAACACACGGAGGCAGGGGAAGAAAT CACGACCGCCGCTACATCCGCCGTGACGCTGGGATGGGGAATCCAGTCAACGATCATCCA AAATCAGAGCATCAGAAAGAAGACACGACTTCGACGGATTTATCATCGGCAGCAGCTTTT CCGTCTACTTCTCAGCCAATCCAAAACCTCGATCATTCTACAAAACCTTCAAAGTCTCAC CGGAATCGACGCAGCCGTGGATCAAATTCAAAACCTCGTCCCGTGGAGAAACCGGAGGTG AATTCAGCTGAATCCGATGCCGATGACCGACTGCCAGACGAATTAAACAGGTTAACGGCG AACCACAATCCCCCTTCCGGACCCGGCAAGGGACAGGTCGGCGCCCGGCCCTCGGGGCGG GGCGGCGCCGGCCCACGCCCGCGCCCCGGNCAGGCCGCGTTCGCGCCCGTGCGAGAGGAC GGAGGAGCGGAAAGCTTGGGAGGCCGACGCGCGCCTGTCGCGCGGAGGGGGGGGCGGGGC CGAGCGGGGGGCTCAGAACTCCCCGCGCCCGCACCGGCGGCCCACTTCCAACCCCCTGAG CGGNGGCGCGAGGGGAGAGAGGACGCGCTCCACCCACCTCCGCCCGCGGGACGGCCCGCG GCCCCCGCGCCGCCCCGCGCGCCCGCCGGCCANACAATCTCGAAGACGAGTTTAGTATCA AAGAGAAGCGGCGAGGGGGAGAGACGAAAGAAGAAAAAA |
| GenBank Accession | AL755425 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:11666186 - go to primer design |
| BLAST e Value | 4e-152 |
| Hit Clone Code (BAC ID) | F5D14 |
| Hit Gene Code | At1g32340 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | NDR1/HIN1-like 8 |
| Insertion Classification | Promoter |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At3g17860
| Sequence (A. th genome BLAST matches underlined) | >70-012057-strizhov-F9-35St TGACGTAAGGGATGACGCACAATCCACTATCCTTCGCAGACCCTTCCTCTATATAAGGAA GTTCATTAGACTATCTATTGTGATGGTGGATTTATACAAATGGGACCCGCCGCCGACAGA GGTGTGATGTTAGGCCAGGACTTTGAAAATTTGCGCAACTATCGTATAGTGGCCGACAAA TTGACGCCGAGTTGACAGACTGCCTATGGGATCCTCCCTATAGTGAGTCGTATTACTCAC ATTCGCCATCTAACTTACTAGTATTTTCATGGATGTAACTTCATTCTCGTTCTGTTTCTT ATGCAGTGGCATTACCTCTGGCTCGCAAAGCATCCCTGGCTATGGGATCCTCCCTATAGT GAGTCGTATTACTCAGNGTCTACATTCACGTCCAAATGGGGGCTTAGATGAGAAACTTCA CGATCGATGCCTTGATTTCGCCATTCCCACATACCCATTTCATCTTCAGATTGGTCTGAG ATTATGCGAAAATATACACTCATATACATAAATACTGACAGTTTGAGCTACCAATTCAGT GTAGCCCATTACCTTACATAATTCACTCAAATGCTATGGGATCCTCCCTATAGTGGAGCG TATTACT |
| GenBank Accession | AL755426 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr3:6122384 - go to primer design |
| BLAST e Value | 7e-52 |
| Hit Clone Code (BAC ID) | MEB5 |
| Hit Gene Code | At3g17860 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | jasmonate-zim-domain protein 3 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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