SimpleSearch - Line and FST details
Line specific information
| Line ID | 098E12 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N409372) |
| Segregation Analysis | 50:15:10 |
| Confirmed for Hit | At4g24972 |
| Parent of DUPLO pair | 12664 |
| Parent of pair(s) | none |
Gene hit At4g18180
| Sequence (A. th genome BLAST matches underlined) | >93-012075-strizhov-E12-8409 NTGATCCATGTAGACTTTCCCGGACATGAAGCACTTTACAATTGAATATATACTGAATCG CGAATCTCTTTTATGGAATCCATCGTATCCTGCGTAGTATGACTCATACAACTCATGTGC TTAGTACACCTTCACCTTGCCCTTCCGCATACTCTCTGACGCCTTGGTGACATGTAGCTG ATAGAGAGGCTCTGTCTTCGAACTCTTGCAGTTTTCGACGAAACACTACAAAGAAACACA GGCATATGTTTATGCGTTTTACTATGCCATCCCACCTACGGTGAAACCACATATATAGCA GTATATTACTAGCTACATTGCTAAGAGGATATGCTAAAGACTCGTTCTCTCTAACTACAT TTTCTATGGGATCCTCCCTATAGTGAGTCGAATTACTAAGATTGGTCATTCGAAACTTTT TTTCTTTTCATTCAACACATATCATATACTTGCAACAACATTATATAATATGAATGTAAG TCAAAAAGAAGACCAATGATATCCGAAAGCATACTTGTATATAAACTATCTATGNTTGCC AACTTTACCTCTATGGGACCCTCCCTATAGTGAGCCGTATTACTAAAACAGCCCTCCACA CCCAAAAAGAGCCCACACACCCACCCTCCCCCACCTCCCCGGTCCCGTCAGCACGGGCAA TACGGCGCTGCCACTTCCCGCCCGACTGGTAAACTCACGCCCCGATCACAGTTATTCCAT CCATCCAATCAGTCACGAGACCCAACACACACCCACCATTACTCTCCGTTTACCCCACGC ACCGACATATTAGCAATTAAATCT |
| GenBank Accession | AL755502 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:10065434 - go to primer design |
| BLAST e Value | 5e-59 |
| Hit Clone Code (BAC ID) | F15J5 |
| Hit Gene Code | At4g18180 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Pectin lyase-like superfamily protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
Gene hit F23A5
| Sequence (A. th genome BLAST matches underlined) | >93-K012117-022-098-E12-35St NACTGACGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAAG GAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCT TCGGTCTAAACTATCAGTGTTTGACTAAGAACACTGCGAGCGTAGTGCTGTATCATTCAC TTTCACTGTGTATACCCTGGTGTGCTGGGGCGTACCCGGACATCTTCCATCCTACCTGCA ACATGCCTACGTGTGATCGCGTGAAGTGGGAAGTTATAGGAACCTCTCTATACAGAGCCA TGCTTCTCTATACCTATGGGATGCTTCCTAGCGTGAGGCGCATTACTTCATTGGCTGAGC TTGACAGTGCACTATGGGACCCTCCCTATAGTGAGGCGAATCACTC |
| GenBank Accession | FR802917 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:30378399 - go to primer design |
| BLAST e Value | 1e-04 |
| Hit Clone Code (BAC ID) | F23A5 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At4g24972
| Sequence (A. th genome BLAST matches underlined) | >93-012075-strizhov-E12-8409 NTGATCCATGTAGACTTTCCCGGACATGAAGCACTTTACAATTGAATATATACTGAATCG CGAATCTCTTTTATGGAATCCATCGTATCCTGCGTAGTATGACTCATACAACTCATGTGC TTAGTACACCTTCACCTTGCCCTTCCGCATACTCTCTGACGCCTTGGTGACATGTAGCTG ATAGAGAGGCTCTGTCTTCGAACTCTTGCAGTTTTCGACGAAACACTACAAAGAAACACA GGCATATGTTTATGCGTTTTACTATGCCATCCCACCTACGGTGAAACCACATATATAGCA GTATATTACTAGCTACATTGCTAAGAGGATATGCTAAAGACTCGTTCTCTCTAACTACAT TTTCTATGGGATCCTCCCTATAGTGAGTCGAATTACTAAGATTGGTCATTCGAAACTTTT TTTCTTTTCATTCAACACATATCATATACTTGCAACAACATTATATAATATGAATGTAAG TCAAAAAGAAGACCAATGATATCCGAAAGCATACTTGTATATAAACTATCTATGNTTGCC AACTTTACCTCTATGGGACCCTCCCTATAGTGAGCCGTATTACTAAAACAGCCCTCCACA CCCAAAAAGAGCCCACACACCCACCCTCCCCCACCTCCCCGGTCCCGTCAGCACGGGCAA TACGGCGCTGCCACTTCCCGCCCGACTGGTAAACTCACGCCCCGATCACAGTTATTCCAT CCATCCAATCAGTCACGAGACCCAACACACACCCACCATTACTCTCCGTTTACCCCACGC ACCGACATATTAGCAATTAAATCT |
| GenBank Accession | AL755502 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:12839469 - go to primer design |
| BLAST e Value | 5e-28 |
| Hit Clone Code (BAC ID) | F6I7 |
| Hit Gene Code | At4g24972 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | tapetum determinant 1 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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