SimpleSearch - Line and FST details
Line specific information
| Line ID | 102E04 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N409748) |
| Segregation Analysis | 50:48:35 |
| Confirmed for Hit | At1g61110 At5g42840 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 1288, 12447, 89274, 89279, 89283, 89286, 89289 |
Gene hit At1g61110
| Sequence (A. th genome BLAST matches underlined) | >29-K012380-022-102-E04-8409 CGAATCCCCCATGTTTTCCATCAACTTCTAATTTGATATAATGACGATATTTTCACGAAA TCAGTCTCATGATCGTCAAGAGAATATGTAGGAAAAGTATAGATTATTTTGGAGAGTGAA TGTGTTTCATATAAGATGCGAGAAGAAATAGGTGTTAGGTTTGTGTGAGCATATGAGTAC CGAACTGGGTCCCTCGACGAGGAAATTACACGTGGCTAATCGTAGGGCCCAAAATTAGCG GCCAATGGGCATTAAATTTTGGAGAAAAGGCAGGGTTTTTTCGAACTGCCTTATGTCATG CCTTTCTTATGCTACACATCACGCACATACCTCATTTTGGTTTTTGTGTAAGATTTTATA AAAACTATGGGATCCTCCCTATAGGAGTCGTTTTNC |
| GenBank Accession | AL755810 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:22516787 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F11P17 |
| Hit Gene Code | At1g61110 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | NAC domain containing protein 25 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g42840
| Sequence (A. th genome BLAST matches underlined) | >29-K012501-022-102-E04-35St ACCACTTGACGTAAGGGACTGACTCTCTNTCCACTATCCTTCGCAAGACCCTTCCTCTAT ATAAGGAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGATATAGGATGATCCGTTCC CGCCTTACGCCGATACTATCAATGGAGGATACCCGCGCCTCGAATAACTGCACAATCTAG ACGAGCGCGTTTTGCAGTCGAATGTGACCGGCGCGGGTGACGATGCCATGCCGCTGCGCT GAGATGCATAACCACCAGCCTGACTTCCGCCTCAGCAATGTTCTGATACATCACAAGGCC AAGAAATCCTTGGATATCGCTCAGGAAGACGACCGGNTAGCTTAGAGCGCATAGCTGCTG GGTTTCGCGGATGGAAGCTGTCTATTGACACACGGTGCGTCTGATCGGACAGGGCGTCTA AGAGCGGCTCATTACCGTATGATCTCATCGAGACGGGATACATGCCTAGACGACCGGATG TGCTGGCGGCCAGGTGCGACATCCAATGACGTACTGATCCGACTCGCAGCATGTTCATAG NCCGTGGTGACAGCGCCGGGCGGCGTATAATGGGATCCTCCCTATAGGAAAGNANNACNN NCTTTNNNGGGACCCCAGAGCCTTTCGGTCTTTTGCCCTCCCAAAACCAACGCAACACAG GAAACTTGCAATGCTTGGTCAACAAGGTTTTTTGCAAAGGGATTTATCTACTCTTCATTT TCCAAAAACTGTATATCGGGGAAAAGTTCTATGACTTACAATGGCAGGTCGAATACTGGT CCCTTTTTTCCATTGGAGGCCATGATACTTATTTACTCTTTCTTTAAACTGGACGCGGGA ATGTGAAGACT |
| GenBank Accession | FR803029 [GenBank] |
| Graphic View |
|
| Predicted Position of Insertion | Chr5:17179983 - go to primer design |
| BLAST e Value | 1e-41 |
| Hit Clone Code (BAC ID) | MJB21 |
| Hit Gene Code | At5g42840 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Cysteine/Histidine-rich C1 domain family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
