SimpleSearch - Line and FST details


Line specific information

 
Line ID 104B04
Vector Used pAC161
Line Availability available as T3 set from NASC (N409904)
Segregation Analysis 50:13:10
Confirmed for Hit At5g19410
Parent of DUPLO pair none
Parent of pair(s) 2121, 88881

Gene hit F19D11

 
Sequence (A. th genome BLAST matches underlined) 
>26-K018336-022-104-B04-8409
TGATCTGAAATTTCCCGGACATGAAGCCTTTACATTGAATATATCCTGATCCCCGGATAT
CGGATCCTCACTATAGAGAGTTATGTGGGCTTAAAATCCATTTCTAAAGCCCAGTAGATC
TATGTATACAGAATTCACACTATCTCATATGTAATATAATGGAGTTTACGGAGTGTCACA
TTTTATGGCTTGATTCATAAAGTTTTGAACTGTGCCAAATTTCATTTCTTTGGAATGTAT
ACATATAGTAGACCAGCAACATAAAGCACACTCTTCCGTTAACGTAATTTGAACTGACTT
CAAATCTATTATGTATTGAATCAGTTTCTTTTTAACCAGTTGAGCTGATTAAATATATCT
ATTTGGAAAATTTATTCATTTCTTATGATCTGCTTAAATATAGTAACTGACTGCTAATAC
ATAACATAGTAATCCGTACAATGAAACATTGATTCTGATAGCTTCGGATATATGTTTTAC
GAAATTAGTCAATGGAAGAGAGCTTCTAATTTTGATACTAAAGCATTCAGATACCTAACA
TGTGCCTATCTCTATAAGTTGAACGATATCGACTTCCATGAGATGTACATTCTGATTCCA
TCATTAACGATTCATGCTTACCCCCGAAATTAGCAGACCGCTATGCTC
GenBank Accession BX001122 [GenBank]
Graphic View Graphic view of sequence BX001122 of line 104B04
Predicted Position of Insertion Chr2:19227337 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F19D11
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At5g19410

 
Sequence (A. th genome BLAST matches underlined) 
>26-K012136-022-104-B4-8409
TTTGATCCATGTAGATTTCCCGGACATTGAAGCCTTTACAATTGAATATATACTGATCCT
TGACCTTTTTCTCTGATACCAAATTCTTTGTGTGCTTTGTACTACCACTGTTAACGCCAA
CATATCTGTGAGTACAGATTATCCACTATCACATACGCAGTTAAATGAAACAACTCAGTG
AGCAACCTTATAGAAGTTTGATCACAGGGTTTGAAAAGGTGCCCAACCTCTGCCTACCAC
ATTGATCCCTAGATTCTTTCGTTGGCCTACCAATCACTTGATAACGAAGTCGTACTCATA
CATGACTAGCATTATATGACGTTTTGGATATGAAGAATACAACAATACTCATACGATGGC
TTTCTGCTTCCACCCTTCTGATATGGCTACTAGCCACCGCGAGGAAAACTCCATCGTTCT
TTTCTCAGTATCATACTCTCCTGATGAATGATCCTCTGCTTCCTGTTCCTTTTCTTCTTC
AGCACTCCCAACCCCTAACCGCTACTATATAACCGTCACTAGCCTATCCTACACCATCAT
TCACACCCCGATACTCAATTTCGTATCATTACCTGCTGAATCCTCTAAAATCCTATGGGA
TCCTCCCTATATGAGCTATTGACCTTTAACCCGAAATTTACAAGACCGCTATGCTCTATG
GAATCCTCCCTATAGTGAGTCGTATTAC
GenBank Accession AL755981 [GenBank]
Graphic View Graphic view of gene At5g19410
Predicted Position of Insertion Chr5:6547409 - go to primer design
BLAST e Value 3e-97
Hit Clone Code (BAC ID) F7K24
Hit Gene Code At5g19410 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ABC-2 type transporter family protein
Insertion Classification Promoter
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit FR803056 [GenBank]


Last Updated on 10.06.2021 13:37