SimpleSearch - Line and FST details


Line specific information

 
Line ID 105C09
Vector Used pAC161
Line Availability available as T3 set from NASC (N410017)
Segregation Analysis 50:48:21
Confirmed for Hit At5g24530 At5g23880
Parent of DUPLO pair none
Parent of pair(s) 1949, 2855, 3346

Gene hit At5g24530

 
Sequence (A. th genome BLAST matches underlined) 
>67-K018338-022-105-C09-8409
ATTACATTGATATATCACTAGCTCTATGGATCCTACTTCATACTGTAGAAATAGATGGTT
TATGTTGTATCAACCTGCCTATGGGATCCTCCCTATAGTGAG
GenBank Accession BX001225 [GenBank]
Graphic View Graphic view of gene At5g24530
Predicted Position of Insertion Chr5:8382355 - go to primer design
BLAST e Value 3e-11
Hit Clone Code (BAC ID) K18P6
Hit Gene Code At5g24530 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g23880

 
Sequence (A. th genome BLAST matches underlined) 
>67-K018337-022-105-C09-8409
TATATATATTGATTGATGGATGGGTTCACCCCGTCCTGCGGCGTACCTGCAATGTTCCCA
TATTATGATCACACATACTTAATGGGACGACCTTGGGGAGATTATTAATCCTGATGACTA
TGTGATCAAGGATGAAGACATGGACCGAGGAGCAATGCATGTACTTTCCTTGAATTCTGG
TCTTGGTCTTGGTCTTTCTCTAGCTCTTGTTATATTTGCAAATTACACCTCTTAATTTCC
ATGATGTTTGCATAGTGGTGGATCCTTTTACGATCTTTGTATCAAGAATAACAAAGATGT
AAGACATCTGCATGATATGCTCTGAGGATTTGGGATACAGATAGGAAATCTTTTGCCATA
ACGTTGCTGATGCTCTTGATTTGGTATGAGTGCAGATCTTCCAATGAGCGCACTGGATCT
ACAGTTCCATCTTTATATTTTCCTTAACAACTGATTGCTTACTAGTGCAGGCTCCGGGTC
ATACTATGTAGAGTCTTGTGTTGCTTATCAAATTTGTGATATAATTGGCCATTACAGAAC
AGACGTGATGTGGACTGAAGGCTTGATTAGGCAACTGCTATCGGACACCCCGGGGTGATG
AGAAATGGGAACTG
GenBank Accession BX001224 [GenBank]
Graphic View Graphic view of gene At5g23880
Predicted Position of Insertion Chr5:8056021 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) MRO11
Hit Gene Code At5g23880 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation cleavage and polyadenylation specificity factor 100
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit FR803095 [GenBank] AL756077 [GenBank]


Last Updated on 10.06.2021 13:37