SimpleSearch - Line and FST details
Line specific information
| Line ID | 108C01 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N410297) |
| Segregation Analysis | 50:50:38 |
| Confirmed for Hit | At5g49945 |
| Parent of DUPLO pair | 2098 |
| Parent of pair(s) | none |
| Note |
Gene hit At2g26660
| Sequence (A. th genome BLAST matches underlined) | >03-K012334-022-108-C01-35St CTGACGAAGGGATGACGCACAATCCACTATCCTTCGAAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCATATTGTCCTTCCCCGCCTTCG GTTTAAACTATCAGAGTTTGACTGGATGTATTGGCGTCCTACCCTAAGAGCATCCGATCG CCTATGCGAGGCTCTCTATAGTTGAGCTGATAACACGCATGAAAAATCTTCTGAAAGACT GTAACACCACTTTCAAGCAGAGAGAACAACGGAATACATACGCCATTTCGAAATCTTATG TATTGCATTTTAACATCTGTGGGTCAATCGGTCTCTGTACTCCTAACTATGGGATCCTCC CTATAGTGAGTCGATTTACTCANNNNNNNNNNNNCNNNNNNCCCCCTTTCTTTCNCCCTT CTTCCCTTGATNNCCTTACTCTTATTTTCACCGCACCACCCATCCATCAGTGCTAATTAT ATTGGTATAAACAAT |
| GenBank Accession | AL756350 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:11340817 - go to primer design |
| BLAST e Value | 2e-58 |
| Hit Clone Code (BAC ID) | F18A8 |
| Hit Gene Code | At2g26660 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | SPX domain-containing protein 2 (SPX2) |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | failed, line belongs to a contamination group, please check line 108E01 |
Gene hit At5g49945
| Sequence (A. th genome BLAST matches underlined) | >03-K012313-022-108-C01-8409 TTGATCCATTGTAGATTTCCCGGACATTGAAGCCTTTACAATTGAGTATATTCTGACTAT CGCCTCCACTCGCACGTTATTTGCCATCTTATGATCATCTATGATAGACTTCGTTGAAAG TGGTGATAATGCTTGTGCTAGCCTGGGTGGATTTACATGAATGCGCGTAACCATGCTGAT ATTGCCATGCTTATGGCCGCACATGACACCTACAACGTACTCGCTTGCGCTAGGCTACAG GCATTGTCATAGAGAAAAGCAATGTGCAGAGTTTGACCGAGGATACGGTGTTCAAACTAG AGCTCCCATTGGATATTGAAACGTGATGCGATTTACATATTCAGGCACGTGAAGATACCA ACACCGACACATGACGATGAACCGAAGCCACTATAGTACCCTATCTTTACTGACTCCTTT TACTGAATGCTTAAAGACACTAACGCTTCCTTCAACATATCTTACACTCACTCGAAAACA ATAAGATCCATTCAAGTACACTACAAAAGTCTCCAAATCAGACTGAACTCAGAAATGAGC TGATATTGGAACTGCCAAATTCTGTGACTACCAGTTCTCACTCTGCTAATAATTGATCCT ATGGGATCCTCCCTATAGTGAG |
| GenBank Accession | AL756349 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:20319075 - go to primer design |
| BLAST e Value | 2e-98 |
| Hit Clone Code (BAC ID) | K9P8 |
| Hit Gene Code | At5g49945 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hypothetical protein (DUF1682) |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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