SimpleSearch - Line and FST details
Line specific information
Line ID | 114D10 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N410894) |
Segregation Analysis | 50:50:46 |
Confirmed for Hit | At4g39030 |
Parent of DUPLO pair | 6875 |
Parent of pair(s) | none |
Gene hit At4g39030
Sequence (A. th genome BLAST matches underlined) | >76-K012566-022-114-D10-35St NTACTGGCGTAAGGGATGACGCACAATNCCCCTATCCTTCGCAGAACCCTTCCTCTTATA AGGAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAAATAGTATGTTCACTT CCCTCATTGTAAACTGGCTTCGTGTCCGGGAAATCTACGTGGATCAGCATTGAGTATGAT GGTCAATATGGAGAAAAAGAATGAGTAATTACCAATTTTTTTTCAATTCAAAAATGTAGA CGTCCGCGGCGTTATTATAAAATGAAAGGACCTTTTGATAAAACGACGAATTACGATGCG TCGTATTTATAGGCGAAAGCAGTAAACAGATTATTCTAATTCGGAAATCTTTATTTCGAC GCGTCTACGTGCACGTCCAAATGGGGGCTTAGATGAGAAACTCCGCGATCGATGCCTTGA TTTCGCCATTCCCAGATACGCATTTCATCTTCAGATTGGTCTGAGATTATGCGAAAATAT ACACTCATATACGTAAATACTGACAGGTTGAGCTACCAATGCAGTGTAGCCCATTACCTT GACATAATTCACTCAAATGCTATGGGATCCTCCCTATAGTGAGTCATTTACCCTTCAGGG CTNTTCTGAATACTCTCTTCTCTACCATAACCAAAAGATTGAATGATCTTCAAACCTCAA AGAATAGAGAGGTAATACCCCATGGTTTNCAGGGTTACTTACAAAGGGGTTTAGTGGGTC |
GenBank Accession | FR803323 [GenBank] |
Graphic View | ![]() |
Predicted Position of Insertion | Chr4:18188852 - go to primer design |
BLAST e Value | 6e-31 |
Hit Clone Code (BAC ID) | F19H22 |
Hit Gene Code | At4g39030 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | MATE efflux family protein |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Gene hit At4g04300
Sequence (A. th genome BLAST matches underlined) | >76-K012504-022-114-D10-8409 TTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATATATCCTGTTAAC ACAATCAATCAGTACATGCTATGGGATCCTCCCTATAGTGAGTCGTATTACTACACGGAT AGGGGAAGATATGGTTCTTGAAAAAGCGCTCTTCCGTTTATCTATGAACACCTCACCATC ATTAAGCTGATTGGCCCACCCATCACCAACAACCAATTCCACTCGAAGAATTCTTGGATT GGTGTAGCTTCATCAACACTTAAATCATTGGTAAAAAGCCGCATATTCTTAGTCAACTTC AACACTTTGCAGTGATCCCAAATATATACAGCATTTAGAGATGACATAACAGTTTCTGCT CTCCCTGCACCATTTATTACTGGTAGCACTTGTCTAAAATCTCCTCCAAAAACCATGACC TTTCCACAAAATACCTTATTGTCTACACGCTTGATAATATCCGAAAAGCTTTTATCTAAT GCTTCAAAACAAAACTTGCTCTTCATTGGAGCTTTATCCCAAATAATGAGAGATGCTTTT TTAATAAGATCAACTAATTTATCCCAAATAATGAGAGATGCTTCTTTAATAAGATCAGCT AAATCTGATTTTTGGTTTGATCTTACAAACTGAAAATTCGTCTGGATTCAAGGGTATTGA AAATCTATAATGTGCTATTCTACCCCCTTTCTACAACAAAGAAGCGATACCCCTGGGAGC GATATTAAGAACAGTCTGACCTTTAGATCTTCCTACAGCAGCTA |
GenBank Accession | AL756880 [GenBank] |
Graphic View | ![]() |
Predicted Position of Insertion | Chr4:2086926 - go to primer design |
BLAST e Value | 0.0 |
Hit Clone Code (BAC ID) | T19B17 |
Hit Gene Code | At4g04300 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | |
Insertion Classification | TS2TE |
Confirmation Status | unknown |
Last Updated on 10.06.2021 13:37 |