SimpleSearch - Line and FST details
Line specific information
| Line ID | 114D10 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N410894) |
| Segregation Analysis | 50:50:46 |
| Confirmed for Hit | At4g39030 |
| Parent of DUPLO pair | 6875 |
| Parent of pair(s) | none |
Gene hit At4g39030
| Sequence (A. th genome BLAST matches underlined) | >76-K012566-022-114-D10-35St NTACTGGCGTAAGGGATGACGCACAATNCCCCTATCCTTCGCAGAACCCTTCCTCTTATA AGGAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAAATAGTATGTTCACTT CCCTCATTGTAAACTGGCTTCGTGTCCGGGAAATCTACGTGGATCAGCATTGAGTATGAT GGTCAATATGGAGAAAAAGAATGAGTAATTACCAATTTTTTTTCAATTCAAAAATGTAGA CGTCCGCGGCGTTATTATAAAATGAAAGGACCTTTTGATAAAACGACGAATTACGATGCG TCGTATTTATAGGCGAAAGCAGTAAACAGATTATTCTAATTCGGAAATCTTTATTTCGAC GCGTCTACGTGCACGTCCAAATGGGGGCTTAGATGAGAAACTCCGCGATCGATGCCTTGA TTTCGCCATTCCCAGATACGCATTTCATCTTCAGATTGGTCTGAGATTATGCGAAAATAT ACACTCATATACGTAAATACTGACAGGTTGAGCTACCAATGCAGTGTAGCCCATTACCTT GACATAATTCACTCAAATGCTATGGGATCCTCCCTATAGTGAGTCATTTACCCTTCAGGG CTNTTCTGAATACTCTCTTCTCTACCATAACCAAAAGATTGAATGATCTTCAAACCTCAA AGAATAGAGAGGTAATACCCCATGGTTTNCAGGGTTACTTACAAAGGGGTTTAGTGGGTC |
| GenBank Accession | FR803323 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:18188852 - go to primer design |
| BLAST e Value | 6e-31 |
| Hit Clone Code (BAC ID) | F19H22 |
| Hit Gene Code | At4g39030 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | MATE efflux family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At4g04300
| Sequence (A. th genome BLAST matches underlined) | >76-K012504-022-114-D10-8409 TTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATATATCCTGTTAAC ACAATCAATCAGTACATGCTATGGGATCCTCCCTATAGTGAGTCGTATTACTACACGGAT AGGGGAAGATATGGTTCTTGAAAAAGCGCTCTTCCGTTTATCTATGAACACCTCACCATC ATTAAGCTGATTGGCCCACCCATCACCAACAACCAATTCCACTCGAAGAATTCTTGGATT GGTGTAGCTTCATCAACACTTAAATCATTGGTAAAAAGCCGCATATTCTTAGTCAACTTC AACACTTTGCAGTGATCCCAAATATATACAGCATTTAGAGATGACATAACAGTTTCTGCT CTCCCTGCACCATTTATTACTGGTAGCACTTGTCTAAAATCTCCTCCAAAAACCATGACC TTTCCACAAAATACCTTATTGTCTACACGCTTGATAATATCCGAAAAGCTTTTATCTAAT GCTTCAAAACAAAACTTGCTCTTCATTGGAGCTTTATCCCAAATAATGAGAGATGCTTTT TTAATAAGATCAACTAATTTATCCCAAATAATGAGAGATGCTTCTTTAATAAGATCAGCT AAATCTGATTTTTGGTTTGATCTTACAAACTGAAAATTCGTCTGGATTCAAGGGTATTGA AAATCTATAATGTGCTATTCTACCCCCTTTCTACAACAAAGAAGCGATACCCCTGGGAGC GATATTAAGAACAGTCTGACCTTTAGATCTTCCTACAGCAGCTA |
| GenBank Accession | AL756880 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:2086926 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T19B17 |
| Hit Gene Code | At4g04300 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | |
| Insertion Classification | TS2TE |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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