SimpleSearch - Line and FST details


Line specific information

 
Line ID 119F07
Vector Used pAC161
Line Availability available as T3 set from NASC (N411395)
Segregation Analysis 50:46:34
Confirmed for Hit At2g47850 At2g47860
Parent of DUPLO pair none
Parent of pair(s) 2537, 4235, 69432

Gene hit At2g47850

 
Sequence (A. th genome BLAST matches underlined) 
>54-K012517-022-119-F07-8409
NTGATCCTGTAGATTTCCCGGACTGAAGCACTTTACATTTCCCAGTTTAGAGAGACTCTT
AAGGCCAGTGATCACCACATTGCGGAAAAACAGAGAGAGCATTTGATTGTGTCCTCCTAT
GGGATNCCTCCTATAGT
GenBank Accession AL757219 [GenBank]
Graphic View Graphic view of gene At2g47850
Predicted Position of Insertion Chr2:19596413 - go to primer design
BLAST e Value 3e-20
Hit Clone Code (BAC ID) F17A22
Hit Gene Code At2g47850 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Zinc finger C-x8-C-x5-C-x3-H type family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At2g47860

 
Sequence (A. th genome BLAST matches underlined) 
>54-K012822-022-119-F07-35St
TGACGTAAGGGATGACGCACAATCCCACTATCCTTCGCAAGACCCTTCCCTATATAAGGA
AGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTC
GGTTTAAACTATCAGTGTTTCCCTGGCGTCGTCTGCGATGGCCTCTACCGAGCCGTTGAT
ATCTTCCTCAAGGTATAAAAGAGTCTGCTTTTGAGAATGAGTGTTGTATGATTTTGATTG
CTGTGTTACGGTTTTGTATTAGGTTCACCCCCACATGAAAGATTCGGAACGTTACCGTCT
CTGCAAGACAGTCAGCTGTAAGAAACTGTCGCAGGACGCAAGCAGCCACGCGGCGCAAAA
CGAGAGACTTCCGGTTCAGATTGCGGTTCAAGTCCTGTTCTACGAACAGACACGGCTCAA
GAACGCCATGACCAGCGGCGGTGGCACAGGCGGTTCGAACCAAAGCCAGTTCTTCTTGTT
CCCAAACCGCTCGGGAAGCGGGATGGCAAGCGGAGCCATCTCGCCGAGGGACAACTATGC
ATCAGTGAGAAGAGAGAACAGAGAGCTGAGACTATGGGATCCTCCCTATAGTGAGTCGAT
TAC
GenBank Accession AL757220 [GenBank]
Graphic View Graphic view of gene At2g47860
Predicted Position of Insertion Chr2:19601393 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F17A22
Hit Gene Code At2g47860 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Phototropic-responsive NPH3 family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37