SimpleSearch - Line and FST details


Line specific information

 
Line ID 120B03
Vector Used pAC161
Line Availability available as T3 set from NASC (N411439)
Segregation Analysis 50:50:34
Confirmed for Hit At5g41520 At3g03120
Parent of DUPLO pair none
Parent of pair(s) 2024, 11123

Gene hit At5g41520

 
Sequence (A. th genome BLAST matches underlined) 
>18-K012516-022-120-B03-8409
TTTTAATTTAATATCTCTGCTTTTATTGTGCAAACTCTTTATAACAGCTTTTATTTAGCT
ACGCATTAGTATCATGCTTAATTTTGAGGAAACTTCTGAAGCCACTATCTTTAACAACAT
GTTGTGTTCTTAGGTTCCCTAAATCATTTTATGAACTCTGTCTGATAAGCACCTTGTGTA
AATTGCTTTGCTTTAATCTGTTGTGCACTTGGCTTCCCTAAATATTCGATGCTCTGCCAC
TATGGGATCCTCCCTATAGTGAGTCGTTTTACTCAACTGCTAGAATGCAGTGCAATTATG
TTGGTGTGTAATTAAATGTTCTGGTTATGTACAGGGTGGAGCTGGTGGAGCTATGGGATC
CTTCGATATAAAGAGCTGATGTACTTCAGAGGTGGTGATGAAAGGTGCGATAAAAGAAGA
TACCAGACTAATCTGTAGCAATTACTTATATACCTGAGCACAAAAATCCTTGGACTGTAT
AACGAAGGCGCGTATGGGATCCTTAAATCTGCCAACATCGTTTCTCGACTCGTAAAGCGC
ATTCACAA
GenBank Accession AL757257 [GenBank]
Graphic View Graphic view of gene At5g41520
Predicted Position of Insertion Chr5:16609812 - go to primer design
BLAST e Value 3e-106
Hit Clone Code (BAC ID) MPK23
Hit Gene Code At5g41520 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RNA binding Plectin/S10 domain-containing protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At3g03120

 
Sequence (A. th genome BLAST matches underlined) 
>18-K012516-022-120-B03-8409
TTTTAATTTAATATCTCTGCTTTTATTGTGCAAACTCTTTATAACAGCTTTTATTTAGCT
ACGCATTAGTATCATGCTTAATTTTGAGGAAACTTCTGAAGCCACTATCTTTAACAACAT
GTTGTGTTCTTAGGTTCCCTAAATCATTTTATGAACTCTGTCTGATAAGCACCTTGTGTA
AATTGCTTTGCTTTAATCTGTTGTGCACTTGGCTTCCCTAAATATTCGATGCTCTGCCAC
TATGGGATCCTCCCTATAGTGAGTCGTTTTACTCAACTGCTAGAATGCAGTGCAATTATG
TTGGTGTGTAATTAAATGTTCTGGTTATGTACAGGGTGGAGCTGGTGGAGCTATGGGATC
CTTCGATATAAAGAGCTGATGTACTTCAGAGGTGGTGATGAAAGGTGCGATAAAAGAAGA
TACCAGACTAATCTGTAGCAATTACTTATATACCTGAGCACAAAAATCCTTGGACTGTAT
AACGAAGGCGCGTATGGGATCCTTAAATCTGCCAACATCGTTTCTCGACTCGTAAAGCGC
ATTCACAA
GenBank Accession AL757257 [GenBank]
Graphic View Graphic view of gene At3g03120
Predicted Position of Insertion Chr3:717136 - go to primer design
BLAST e Value 4e-50
Hit Clone Code (BAC ID) T17B22
Hit Gene Code At3g03120 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ADP-ribosylation factor B1C
Insertion Classification Promoter
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37