SimpleSearch - Line and FST details
Line specific information
| Line ID | 120D06 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N381361) |
| Segregation Analysis | 50:49:1 |
| Confirmed for Hit | At3g21820 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At3g22110
| Sequence (A. th genome BLAST matches underlined) | >44-K012516-022-120-D06-8409 TTGATCCATGGTAGATTTCCCGGACATGAANGCCTTTACAATTGAAGCAAAATCAAAGAA GAACCGAACGAGAGAGAGAAACGAATTCTTCTCAGGTATTCTCTTAAATCCAATGTCTTT CATTCTCCTACTTGTTCCTATAGTATTCATGACTCTGTGGATCTTCCTTTCCTGTTTAAT TTTGCTGGATCTGTCTTGAGCGAAGTGTTTTCTTATGAAATCTTCAAACTTTTGATAGAA TTTTATAAACCCTATGGGATCCTCCCTATAGAGAGTGGTATGACTNCAAGGAGNNNNTAT ATGGGCATCAGTGATTGTTGAATTATCTTTCGATTTTTCTCTTCGCTCCTGTGATTGTGA CTTTAGGTTTGTGTTGATCTCAAAGTAACATAGATTTATAAAGCTAGGGCATCCTCTTTA TATTGAAGAAACTT |
| GenBank Accession | AL757281 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:7794120 - go to primer design |
| BLAST e Value | 8e-98 |
| Hit Clone Code (BAC ID) | MKA23 |
| Hit Gene Code | At3g22110 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | 20S proteasome alpha subunit C1 |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
Gene hit At3g21820
| Sequence (A. th genome BLAST matches underlined) | >44-K012823-022-120-D06-35St TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCAGTGTGCTTTGATCTCTGGCAGAGACTTGGTGGTAGCATCACCAGTAG AGGACTATTTCTTGTATATTGATGATCTTCCTGATGCAGAAAAGGTCTGAACAGAGTAAT GCTTTCCACCTGTTTGTTCTTTGACCAAAATCTATCGACGCTTACCAGTTTCTTATTCTC ATTATGATAGGAAGAAACCGAGGAAATCACAAGACCGTTTCTATGGGATCCTCCCTATAG TGAGTCGANTTACTCAANNNNNNNNNNCNGGNNGGNNNCCCNNNCCTTTNCCCCGGGGTC CCCCCTGGGGGGGGGGCCCCTTTTTGGGGGCTCTTGGGGGGCTCCCCTGGAACCGGTCTT GGGAATCCTTGGTTCCTCCCTATCTAAGAGAAATAAGAACCTGGAAGCGGCATAGAATTT GTGAAGAAACACAGGGGGAAAGCTTTCTCTGTGCGACCTTTTTGGCGTAGGAAGAAATGA TATTCAAAAAATGTCTCTCTGGGGGATCTCCCACAAGTTTGGCAAGATAAAACCACTGAT GGGTTAACCAAGGCGGGAAACGAAATCGAGCC |
| GenBank Accession | AL757282 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:7689423 - go to primer design |
| BLAST e Value | 2e-113 |
| Hit Clone Code (BAC ID) | MSD21 |
| Hit Gene Code | At3g21820 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | histone-lysine N-methyltransferase ATXR2 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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