SimpleSearch - Line and FST details
Line specific information
| Line ID | 134D01 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N412805) |
| Segregation Analysis | 50:15:15 |
| Confirmed for Hit | At1g22220 T4M8 |
| Parent of DUPLO pair | 12449 |
| Parent of pair(s) | none |
Gene hit At1g22220
| Sequence (A. th genome BLAST matches underlined) | >04-K104608-0022-134-D01-8409 NAGCCATTTCAATTGAATATATCCTGAAGAGAATATATCGTAGGACGACCTCGGGTACCT TTATAGCAGCGAATATATATTCTTATGTCCAGCTTATTGACCTTTCTCAATCCGGTCGAA CCGGGAGAGAATCTTGAAGGGGAGACTCGGAGAGAGGGTGGTTATTGTGATTGGTTTANC CGGTTTGGATAAAAGAGAAACTATGGGATCCTCCCTATAGTGAGTCCNATTANTNN |
| GenBank Accession | FR803939 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:7847078 - go to primer design |
| BLAST e Value | 3e-45 |
| Hit Clone Code (BAC ID) | F16L1 |
| Hit Gene Code | At1g22220 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | F-box family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL765043 [GenBank] |
Gene hit T4M8
| Sequence (A. th genome BLAST matches underlined) | >04-K013053-022-134-D01-35St ACTTGCCGTAAGGGATGACGCACAATCCCACTATCCTTCGCAGACCCTTCCTCTATATAA GGAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCC TTCGGTTTAAACTATCAGTGTTTGAAAAGCAATTTTGGAAGAATTAAAACCACTTTGAAA ACCACAACTATTCAAAACCATAATTTCCTTGGAAAAATAAAGATTTTCATAAAAACCTCA AAACCATGGTTTTTAGTTTCTTTTAGAAACTTGGAGAAATCACTATGGGATCCTCCCTAT AGTGAGCAGTNTAACTCAGATCCGTCGTATTTATAGGCGAAAGCAATAAACAAATTATTC TAATTCGGAAATCTTTATTTCGACGTGTCTACATTCACGTCCAAATGGGGGCTTAGATGA GAAACTTCACGATCGATGCCTTGATTTCGCCATTCCCAGATACCCATTTCATCTTCAGAT TGGTCTGAGATTATGCGAAAATATACACTCATATACATAAATACTGACAGTTTGAGCTAC CAATTCAGTGTAGCCCATTACCTTACATAATTCACTCAAATGCTATGGGATCCTCCCTAT AGTGAGCGTNTTCCTC |
| GenBank Accession | AL765044 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr2:1076479 - go to primer design |
| BLAST e Value | 1e-74 |
| Hit Clone Code (BAC ID) | T4M8 |
| Insertion Classification | Genome Hit |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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