SimpleSearch - Line and FST details
Line specific information
| Line ID | 134E03 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N412819) |
| Segregation Analysis | 50:41:40 |
| Confirmed for Hit | At5g60170 |
| Parent of DUPLO pair | 11719 |
| Parent of pair(s) | none |
Gene hit At5g60170
| Sequence (A. th genome BLAST matches underlined) | >21-K012718-022-134-E03-8409 TTGATCCATGGTAGATTTCCCGACATGAAGTCCTTTACAATTGACTATATCCTGTCGATG TACTATATATAGCCGAGCAGCTAGAAGTGATGATGGGGTGTACATCAACTCCGAGGCTAG CATTACAATGACACCATGACTAGTTCTGAGGCGGTACTTCCTCTATGGACGACGTCATGC TTACTTACTAGATCATAACTGCGAGCTCGATGCTGAGCTATGGGATCCTCCCTATACAAG AGACGAGATACTAACAGCCTATACAAAGAATTTGCATCATCTGAAATGGTAAAACACCCT CTTGCTTTATGATACGCTCTGTTTCATGGTACCAGTATCTTTAGGTAATGTAATATGATA GTTGGTCTATGGGATCCTCCCTATAGTGAGTCGATTTACTC |
| GenBank Accession | AL765058 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:24229347 - go to primer design |
| BLAST e Value | 2e-30 |
| Hit Clone Code (BAC ID) | F15L12 |
| Hit Gene Code | At5g60170 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RNA binding (RRM/RBD/RNP motifs) family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit T1D16
| Sequence (A. th genome BLAST matches underlined) | >21-K104607-0022-134-E03-8409 ACTTACCATTCAGTTACACCACGATGGCTCTATGGGATCCTCCCTATAGTGAGATCATTT TCTTTCCNACATCAAAACTGCAATATATTTCCTAAGCTATGGGATCCTCCCTATAGTGAG ATNNNNNAACANCNAATCNNNNGGCCCNNATAAAAAAGAATANGTAAGAGNGGAAGGCCT AACAGAAGAAAAAAATGAAACGNGATGAGAATAGAGCAAGCAATAATTGAAACAAACAAA AAAAACATCACGGAAGGAAAGAGATAAAAAACTAGAAAGAGACAGATATGAAATAATACC ACACGCAGACAATGGAGAAAACTCACAGAAGAAAGTAAAATAAAAATACAAAAAAGTAGA AAAAAACAAGAAATAAAACACGATTATAAAACACCCCAAACAAAAAAAAAGCAAGAAATA GAAATACAAGAAATAGCGAAAACATAAAAATAAAAATAAAGAAATAATAAAAAACAATAA GCATAAATATGCAACTCAAAAAAAGAATACTAAAATATAGATCTTAGAATCAAACATGAA AAAAACGAATAAAATAAAAATATGAACCATAAAACAACAAATAAGTATAAAACACCGCCC AAAGAAAAAATAAAAATCAACAATAAAGCATTAAAAAAACAGAATAAATAAAGCTATATA AAAAATAAAAAATACATAAAATACTGAAGTCAATAAAAACGAAAAACTACATAGAACCAC AAAAGATAAATAAAAAGACAACGATAAATATCTAATTGAAAACTAATAACCCGCAGAGAC AATAAAGATAAATAAAAAA |
| GenBank Accession | FR803958 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:11196692 - go to primer design |
| BLAST e Value | 4e-11 |
| Hit Clone Code (BAC ID) | T1D16 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | FR803958 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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