SimpleSearch - Line and FST details


Line specific information

 
Line ID 147G08
Vector Used pAC161
Line Availability available as T3 set from NASC (N414096)
Segregation Analysis 50:45:36
Confirmed for Hit At1g12290 At4g11610
Parent of DUPLO pair none
Parent of pair(s) 2198, 5882, 5889, 5900, 5911, 5932, 5938, 5959, 5963, 5989, 5997, 10455, 10481, 10489, 10500, 10514, 79995, 80000, 80014, 80021, 80031, 80036, 80037, 80046, 80047, 80048, 80050, 80064, 80065, 80079, 80080, 80088, 80090, 80092, 80094, 80095

Gene hit At1g12290

 
Sequence (A. th genome BLAST matches underlined) 
>09-K116217-0022-147-G08C-3144
ACCGGACTTCCATCGGATCATGAACTCCCATGCTCGCACAAACACTTTGACAGCGAGTGG
TGAATGCTATTTTGCATCCGTTTTCACTTGTTGGATTCGGGATTCCAATCTCAGTTAGTT
CCACCCTCTTCCATATGTCATCCAAAAGCAACACAAATCTCTTTTTGCTTAGAAAATTGA
GTATATCGACTGCCTTTTGGTTTTCACTTTTCTGGTTCCATTCCACGCCTATAAATCCTA
TTTTTTCGCCAATCTTTATTTATATCTAAA
GenBank Accession HG967712 [GenBank]
Graphic View Graphic view of gene At1g12290
Predicted Position of Insertion Chr1:4180317 - go to primer design
BLAST e Value 9e-142
Hit Clone Code (BAC ID) F5O11
Hit Gene Code At1g12290 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Disease resistance protein (CC-NBS-LRR class) family
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At4g11610

 
Sequence (A. th genome BLAST matches underlined) 
>63-K028832-022-147-G08-8409
ATANCCTTATACNAATCTTCCCAATCTTCNCATCTCTATTTCCTTTTTCACCNANCTGNC
CGNTATCNNNCNCNCCNNNNNNNTNNNNCCGTGGGGGGGGCANNNACTTCCCATTGTAAN
AGATCCATANACTTGTGACAATNTTTAACTTTACTTTTCCCCGATGAAAACCTTTTTGTC
CTTCCTCTTTAGAGGGAAAAGAGGCCGACGCTTCGTAAACTGAACGTCGTAAAAGATTAG
TGCGTGATGTAATTATTAAAAAACTTTGTCAAAGGTTAATAGGGGGATTCCTGGTAGTTG
GAACGTGCTAAAACTATTTTTTGGGGAGAGAAAATATTTTTTTTTTTGAAGGACCGAAGT
GGCCCTTCCTTATAAGTTCTTCCTAAAACAAAAGTCGG
GenBank Accession CR934748 [GenBank]
Graphic View Graphic view of gene At4g11610
Predicted Position of Insertion Chr4:7014804 - go to primer design
BLAST e Value 2e-17
Hit Clone Code (BAC ID) T5C23
Hit Gene Code At4g11610 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation C2 calcium/lipid-binding plant phosphoribosyltransferase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL757381 [GenBank] CR934748 [GenBank]


Last Updated on 10.06.2021 13:37