SimpleSearch - Line and FST details


Line specific information

 
Line ID 148E10
Vector Used pAC161
Line Availability available as T3 set from NASC (N414170)
Segregation Analysis 50:20:15
Confirmed for Hit At1g52825 At4g20200
Parent of DUPLO pair none
Parent of pair(s) 497, 6419, 6423, 6428, 6429, 10643, 10646, 10648, 12636, 81309, 81338, 81383, 81397, 81409, 81451, 81460, 81466

Gene hit At1g52825

 
Sequence (A. th genome BLAST matches underlined) 
>77-K013396-022-148-E10-35St
TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGAAGACCCTTCCTCTATATAAGGAA
GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG
GTTTAAACTATCAGTGCAGCCGTCTTCTGAAAACGACATGTCGCACAAGTCCTAAGTTAC
GCGACAGGCTGCCGCCCTGCCCTTTTCCTGGCGTTTTCTTGTCGCGTGTTTTACTCGCAT
AAAGTACAATACTTGCGACTATGGGATGCTCCCTATAGTGATTCACATTACTACACGTCG
CTGTCCTGCTGGGCATTGCCCGCGTAAACACCTGTTGTATTCTGGAGATCTCATCTGCTG
ACCAGTGGAGCCCGCAACGAATATCTTACTCATTATGCCAGCGGTACGTTGAACCCGACT
GATACTGCAACTGGGCCGACCTCGAGGGACTTTCTACTGCAGGAATGGTATAGCGCAACA
TGGATGCACTTGGGGCTCCTATTGGATACTCACTCATGTGAGTCTTTTAACGCAGAAGCA
GGACCAGGGCCTTCTTTAGGATAAACAACGCATGAATGATTGCCC
GenBank Accession FR804475 [GenBank]
Graphic View Graphic view of gene At1g52825
Predicted Position of Insertion Chr1:19670738 - go to primer design
BLAST e Value 3e-08
Hit Clone Code (BAC ID) F14G24
Hit Gene Code At1g52825 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation sporulation-specific protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At4g20200

 
Sequence (A. th genome BLAST matches underlined) 
>77-K013071-022-148-E10-8409
NTTGTCCATGTAGATTTCCCGGAATGAAGCACTTTCATATGACAACAATCGACCGCCGTA
TATATTAAGTCTGGATACTGAGCAGTTTAGGAGTTATAAACACACCAGCTGGTTCCTTCG
TAAGGGAAGAACTTTGGCTTAGGTGTAAAAACTCTTTTACCAAAAAATTTGTGGGAACCG
AGGGTTCTGAAAACCCAAAAGATGATGGAAACTGTGTACAAATCTTTTTGACCGTCCATA
ATCCAATCTATGTTTTGAAAACTAATTGGAAAAGTTTCACAAATCTCTTCCTCAAAAAGA
GGGGCAAGGCCAAGGCTTACCGGCAAATATATCATAAGGGATGCAATGGGGGGCCGAGAA
AATGCCTTAAAAGGACATGAATGAGCACTTTATTATCGGCTTTAGTGCATCGATCTCTTT
TCTAAGGGCATCCATTTCCTAGAGGGGAAATTTTGTACATACACATGAAGGAACCTTCTC
TGCATCAAGGGCCACATAACTTTGAGTAGGCGTTATATAAAGGGACCTACCGGGACATCC
ATGGAAACGGAGGGGCCATGAGGAGGCCATTCAAAGGGGGGGATTTTTTGGAACTTGCCA
ATACGTTCTTGACCGTAAAAGGGGAGAGGGGTTAGCGGCCTTTAAACGAAGATGGGTTAA
TTGAAATAATGGGAAAGGACCTCCAATTGAAAACCATAGGAGTTT
GenBank Accession AL757449 [GenBank]
Graphic View Graphic view of gene At4g20200
Predicted Position of Insertion Chr4:10910430 - go to primer design
BLAST e Value 4e-47
Hit Clone Code (BAC ID) F1C12
Hit Gene Code At4g20200 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Terpenoid cyclases/Protein prenyltransferases superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL757449 [GenBank]


Last Updated on 10.06.2021 13:37