SimpleSearch - Line and FST details
Line specific information
| Line ID | 154H11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N414783) |
| Segregation Analysis | 50:50:18 |
| Confirmed for Hit | At2g29060 |
| Parent of DUPLO pair | 11845 |
| Parent of pair(s) | none |
Gene hit At1g78900
| Sequence (A. th genome BLAST matches underlined) | >29-K018348-022-154-H11t-8409 AGATTTCTTGATCCCCTGAGATTCAAGCTCTATCACGGTATCCTGAGAAATGAAAATCAC CGACAAACAATTATTAGCAACAAGCCAAACATGATCTACAACAGGAAGTGATTACCAATT GATCAAGTTAGCCATATATTAACTCAAACGTTGAATTCAAAGAAATCAAGGAAGAAAAAG TTTGAAACGTATTTATTCATAACTGTTTGAGGGAAACTTAAAGTCAAACCTTAAGCGAAT ATTGACCAGCTGGAGCAATGTAAGTGATCTTCCCCATGGCATCCGGAGGAAGGGCAACGA GGTGATTCATCAAAGTGTTCTCAAAGACAGTCTGCATTCCAAAGTTTAATTTGACTTTCA GAAAAAACTATTCCCAGTGTAAACAAGGGAAACACCACGGTAACTGTGTAAATAGATTCC CTTGTCAAAAGCAGATTAAAGAGGAGACCAATAAACTTACAGCATACAAGTCACCACCAG TTATTGTGTCTCCCTCGACTGCAAACAAAACGAATTCAATTGACCATCAAGATTAAAACC AAATGAACACTTCCATAGACAGGCATATGGAGTAAACCACATTACCAAATTTATTGGGCT GGAACTCCCAAAGACAATCTTTGTCAAGAGCTGGAACAGACACACCCCGAGGAATGTACA CATCACCGGATATTCTTGCAATAGTCTTCAAAGGCCTCTGTGACATTTAAAGAAATGAAA CCAAAGAATCGTAAGAAGCCACATAAAACGAATCATAAGAGTAAAAAAAATCTGCC |
| GenBank Accession | BX285229 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:29662025 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F9K20 |
| Hit Gene Code | At1g78900 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | vacuolar ATP synthase subunit A |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At2g29060
| Sequence (A. th genome BLAST matches underlined) | >88-K013140-022-154-H11-8409 CGGTGATTTGGTTTCTAACTATGTTGTAATGATACTGACTTGGCGTTACAATTCAAGAAA GGGATGGAGGAAGCTAGAGCATTCAATGCCTAGGGTGATGGCACACACACTCTCCTCCCG GCACCTCCCTATAGATTATGGCACACGAAGGAGGAGAAGAGCACGCACTTCCTATATACC ATTCTCAGTCTACTGATGGTGTGATCTATCTCTTCTAATTATCACTCCAAGCAATGGACA CGACGTTACGCAGTGATGTCCGATAGGGAGGCAGTAACGTGGCTATATCCAATCCTCTGC AAAAAGAATCAAGATCTCACGAAACAACTGGGCCTTTAGATACTCCTTTTTCAGACCATA CACTGGAAACATGTATGCTACCGTGTCAAAAGACTTCCTTTCTAAAAGCAAATTATAGAC GGACATTCGCTCACTTTCCCCATACAAGTTTCCACCTATTTCTTGTGTATCCCCCTACTG CATACCCCACACATTTTCCTTTACCATTACTATCACAATCCAACCGACCATTGGCCTTCG TATGCCCTATGGCGTTACCTTCCATTCACCAATCTTACCCCCCGCTCGGAACTTCCCTTT CCCACCTCTTTTTTCCCAGCTGGAACTACAATTTCCCATGTGCGCTGCACCACATTTAAC CGCCATTGTTCCCACCAACCCTTTTACAGCCCCCCGCGTATACTCTAACACACTTTCACG TCCCTCTCCTCGTGCACAAACCACACCCAAATGGATCCAACACCCGTAAAACATTCCGCG GCTTATGTGATACCTCTCTTCGCACCCCCCCCCTTCCCGGGTTCATTTCCACCCATTTAT TCCACCCTTCTTCCACCCATATTATACCCGTTGCGGCGGCGCGTGAATTCAGTGCGCTAT TCGCTTGTATTCGTTTCAACCATCACTCTTTCGGTACGGCACCATTACTTCTGGTATTCT TCCCCCACACCCTTC |
| GenBank Accession | BX942878 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:12482542 - go to primer design |
| BLAST e Value | 3e-26 |
| Hit Clone Code (BAC ID) | T9I4 |
| Hit Gene Code | At2g29060 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | GRAS family transcription factor |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | BX942877 [GenBank] BX942878 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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