SimpleSearch - Line and FST details
Line specific information
| Line ID | 169C07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N416159) |
| Segregation Analysis | 100:91:89 |
| Confirmed for Hit | At1g32230 At3g18140 |
| Parent of DUPLO pair | 12634 |
| Parent of pair(s) | none |
Gene hit At1g01990
| Sequence (A. th genome BLAST matches underlined) | >51-K028795-022-169-C07-8409 GAATATATCCTAATATGATTAACATACATATGAGAGATGAGGACACTAATTATTATTTAC TTCTCATTCTCAAATGAGGTTTATCAACTTAATTACCAGTATGGGATCCTCCCTATAGTG AGACCTATTACACAACCCCCTATACAACCCCAGGTCTCACTATAGGGAGATCCCAAAACT CTCANTATAAGCGGGAAAGAAGCCGCAAATTNAAATTTTCTTTNTAAAAAGAGCCACCCC CTTTGGAAAGAGCCCTCCCCCCCACCACGAAATTTGTGGGGAAACCCCCACCCACCCCCA AAACCGGTACCCCGAACTAAAAATTCCAACCGGCCCCCCTGAAAATAAAAACCCGCTCCC ACTCCCCACGGGAAACACCATGGGAAAATTTTCCCAAGGGGCCAAAAGCCTAAGGCACCC ACCCCCCGTGGGGAAAAAAAACCCCCGGTCTTTAACCCCTCTTCCAAGGAAAATAAAAGA GAGGTCTCACTATAAGGACAACCCAAAACTCCCACCAGAAGCCCGNNAAAAAAAAAGAGG CAAGCCTGTTTCCAAAAAC |
| GenBank Accession | CR934845 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:344489 - go to primer design |
| BLAST e Value | 4e-37 |
| Hit Clone Code (BAC ID) | F22M8 |
| Hit Gene Code | At1g01990 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hypothetical protein |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
Gene hit At1g32230
| Sequence (A. th genome BLAST matches underlined) | >51-K013387-022-169-C07-8409 GTGATCCATGTAGATTNTCCCGCACATGAAGCACTTTACAATTGAATATATCCAGATGAA GCATTTCCTTGGTACTGAGCCACGAATCTCTATGAGGATCCTCCCTATAGTGAGTCTGAT ACCTAATCATGGTTGTGATTGGAACATGTAAATAGGCTGGAGAGTACCCCCAGATAAGCA TTATCTATGGGATCCTCCCTATAGTGAGTGGGTGTACTACATAATCGAACAGGCGGACAC TACACGCAGAGAGATATGGTCTTATTCAATAATGGAATAATATTATCATGAGGAGAACAA AAATATTACAATTAAATGTAACGAGGGCAACAATTATAAAATTGTTGAAATTAGAAAAGT GTGTATTGACGGAACATGATAGATAAGATTGTGAATCGATGAATAGACTATGGGATCCTC CCTATAGTGAGTCGATTTACTC |
| GenBank Accession | AL770237 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:11612201 - go to primer design |
| BLAST e Value | 4e-81 |
| Hit Clone Code (BAC ID) | F3C3 |
| Hit Gene Code | At1g32230 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | WWE protein-protein interaction domain protein family |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At3g18140
| Sequence (A. th genome BLAST matches underlined) | >51-K013446-022-169-C07-35St TTGCGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCCCACGGCCCAGTCCCGGCTTCCCAGACTCGAAAGGTGTGAGCATAGCT A |
| GenBank Accession | FR804913 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr3:6214501 - go to primer design |
| BLAST e Value | 0.36 |
| Hit Clone Code (BAC ID) | MRC8 |
| Hit Gene Code | At3g18140 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Transducin/WD40 repeat-like superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | FR804913 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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