SimpleSearch - Line and FST details


Line specific information

 
Line ID 169H04
Vector Used pAC161
Line Availability available as T3 set from NASC (N416216)
Segregation Analysis 100:71:68
Confirmed for Hit At5g43930 At4g18205
Parent of DUPLO pair 2336
Parent of pair(s) 72333, 72339, 72344, 72351, 72354, 72355

Gene hit At5g43930

 
Sequence (A. th genome BLAST matches underlined) 
>32-K028789-022-169-H04-8409
GGTATTGTATGTAGACATCTGGTCGGATTTCAGTTGTGCATATGGGGTCTTTGATGACAT
GCAACCACATTCTGAGTTTGACAGTATGGGATCCTCCCCATAGGGAGTC
GenBank Accession CR934874 [GenBank]
Graphic View Graphic view of gene At5g43930
Predicted Position of Insertion Chr5:17679520 - go to primer design
BLAST e Value 3e-22
Hit Clone Code (BAC ID) F6B6
Hit Gene Code At5g43930 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Transducin family protein / WD-40 repeat family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit CR934874 [GenBank]

Gene hit At4g18205

 
Sequence (A. th genome BLAST matches underlined) 
>32-K013387-022-169-H04-8409
CGTGATCCATGGTAGATTTCCCGCACATGAACGCATTTACAATTGAATATATCCTGATTA
AGAAATTGCAAATAGATGGTGCCCATGAGAACTGATAGAATTTGGATGAAAGACTATCGC
GTTTTTTGATTGCTTTCGCTGGTATGTCTTTTACATACAGAGGAGACCTTTATTTATACA
CAGAGGGATATTGATTATACTGGCTCCTACCCCAAATGCAGGAGCACTATTCAATGTTGG
GAGACTTTAACTAGATTCGTTTTTATTAATAACGATGGGTCAGGTGATAGATGACAACGG
TATGGTATTTTACTAGTCTCATGCTGACCATTGACCTTTCTTATTGGCTTACACTTGACT
TAAAATTCTTAAAACTTAAGAATGGCGGCTCTAAGAGAACTCTTTTTCCTCAGTGTCTAT
TGACGTTAAATCAGAAGTCAACAAAGATACAAGAAGCCAAGCTCCTATGGGATCCTCCCT
ATAGTGAGTCGNTTTAC
GenBank Accession AL770274 [GenBank]
Graphic View Graphic view of gene At4g18205
Predicted Position of Insertion Chr4:10073877 - go to primer design
BLAST e Value 3e-94
Hit Clone Code (BAC ID) T9A21
Hit Gene Code At4g18205 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Nucleotide-sugar transporter family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL770276 [GenBank] AL770276 [GenBank]


Last Updated on 10.06.2021 13:37