SimpleSearch - Line and FST details
Line specific information
| Line ID | 175F11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N416775) |
| Segregation Analysis | 100:100:87 |
| Confirmed for Hit | At3g52970 At3g27700 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At3g52970
| Sequence (A. th genome BLAST matches underlined) | >86-K013517-022-175-F11-8409 NTGATCCATGGTAGATTTCCCGGACATGAANGCCTTTACACTTGAATACCTGCAGACTAG TGCGACTCTAGCTAACATGCAGTAAACGAGTGAGCTATAGCAGAAGTGCATACTGAAAAA CGGTCGGGCTATAACTTAATCCATGCTTCAAAAACCTAATGGCTTATCTATGCGCAGCCT CCCTGCAGTGACGACATTCCACAAAGGTGGATAAAGATCGTATAAGCCAGGAACACCAGC GCTATAGGATCCTACATATAATGAGAGAACGAACGGAGGTTAGGGAGAGAGAAAAGAGCG ACGAGAAGACGAAAGATTACTTAGATGTTCTTTTGGAGTTTCGTGGTGGCGATGGAGTCG ACGAAGAACCTTCTATGGGATCCTCCCTATAGTGAGNNNNNNNNNNNNNNNNNNNNNNNG NCGNCCNCNNNNNNNNNNNCNNNNNNNNNNCCNCCNCGNCGCGCCCCCNNNCGNNNNCNC CGCGCCCGCCCCCGGNCCCCGGCCGGCGCCCCCCCGCCCCCCGCCCCNNGCCNGNGCCCC GCCGCCGCGCCCCCCCCCCGCCCCCCCCCCGCGCCCGCCGCCCCCCCCCGGCGCGNCGCC GCGCCGCCGCNCCCCCCCCCCCCCCCGCCCCCCCCCGCNGCCCCGGCCGNCGGCTCGCGC GCGCCCCCGCCCCCCCCCCGCGGTCGCCTNCGCGGGCCCCGCGCCGGCCCCCCCCGNTCC CCCCGCCGTCCCGCCTCCCGCCCCCCCCTTCCCCCCCCCCCCGTTTGTTCGACCCGTTAC CC |
| GenBank Accession | BX649763 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:19642456 - go to primer design |
| BLAST e Value | 1e-56 |
| Hit Clone Code (BAC ID) | F8J2 |
| Hit Gene Code | At3g52970 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | cytochrome P450, family 76, subfamily G, polypeptide 1 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At3g27700
| Sequence (A. th genome BLAST matches underlined) | >86-K013532-022-175-F11-8409 CTGATCCATGTAGATTTCCCGGACATGAANGCCTTTACACTTGAATCTATGCAGCCTATG CGATCCTACCTATATGTGACTACACCCATTTTCAGCGGCGTCTTGGTTACTGTCATCCAG TGGAGCCACATTTTCATCAACCCCATGAAAATTGAGTGTATATATTGCACCTGAAGTTTC ACCAGTACTATTATTCCACAAAGGTTGATCAGGATCGTAAAAGTCAGTTCCACCAGCACT ATGGGATCCTCCCTATAGTGAGAGAACGAACGGAGGGTAGGGAGAGAGAACCGAGCGACG AGAAGACGAAAGATTACTTACATGTTCTTTTGGAGTTTCGTGGTGGCGATGGAGTCTACG AAGAACCTCCTATGGGATCCTCCCTATAGCGACTCCCTTTTGTTTTT |
| GenBank Accession | AL770901 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr3:10259843 - go to primer design |
| BLAST e Value | 4e-78 |
| Hit Clone Code (BAC ID) | MGF10 |
| Hit Gene Code | At3g27700 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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