SimpleSearch - Line and FST details


Line specific information

 
Line ID 179C04
Vector Used pAC161
Line Availability available as T3 set from NASC (N417116)
Segregation Analysis 100:92:88
Confirmed for Hit At5g05410
Parent of DUPLO pair 2600
Parent of pair(s) 6413, 6442, 6444, 10635, 81306, 81394, 81407, 81415, 81448

Gene hit At1g33750

 
Sequence (A. th genome BLAST matches underlined) 
>27-K104551-0022-179-C04-8409
AGCCATTTACAATTGAATATATCCTGTAAGGCAAGGGACAACTACTCTCAACACCACTAT
GGGATCCTCCCTATACTGAGACAGTCGTTATTGTAGAACATTATTCTGAGCACTGATATT
TTGTAGGAATTTGATACACTATGGGATCCTCCCTATAGTGAGAANANANANANNNANANT
TACCACCTTTTTTTTTATTCGGCAAAGTAAATATCCACATCGTTCTTATTCGGAGAACGT
ACTTTTTGATATGTCACCTTCTTGTCAAAAGGGGAATTTATAGGCGAAAGCAATAAACAA
ATTATTCTAATTCGGAAATCTTTATTTCGACGTGTCTACATTCACGTCCAAATGGG
GenBank Accession FR805146 [GenBank]
Graphic View Graphic view of gene At1g33750
Predicted Position of Insertion Chr1:12234013 - go to primer design
BLAST e Value 2e-25
Hit Clone Code (BAC ID) F14M2
Hit Gene Code At1g33750 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Terpenoid cyclases/Protein prenyltransferases superfamily protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At5g05410

 
Sequence (A. th genome BLAST matches underlined) 
>27-K013563-022-179-C04-8409
NNNAACCTGATCCATTGTAGATTTCCCGGGAATGAAGCACTCTTACAATTGACACTACNC
CTTGTATGGCCAAGGACCAAACACTCTGCTTAACACCGCCATGTGACAGACTCGAATCAA
TAGCTTGAGCATGATTGGAAAGCACCATGCCTAAGCCTGCTACTCTCGATAGAGCTCTGA
TGCTCTCATGGGCTCCATTTACTCCAAATGCTTTGCCTAACTCCTCTGAAACTACATCGG
CTATTCTCTGGTCCTCCTTTACCTTTCATACAACCCTTCTTCGACCCTTTCGCAGGTACT
TTCCTCTTCTTGGTAGAAACTTCTTCTACGGTCTCGTTATACTCTTTCCATCTCTTTAAT
CTCTCAGCCACAGTAGTACCGTCACCTCTACTTCTATGGGATCC
GenBank Accession BX546572 [GenBank]
Graphic View Graphic view of gene At5g05410
Predicted Position of Insertion Chr5:1603055 - go to primer design
BLAST e Value 1e-105
Hit Clone Code (BAC ID) K18I23
Hit Gene Code At5g05410 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation DRE-binding protein 2A
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX546573 [GenBank] BX546573 [GenBank]


Last Updated on 10.06.2021 13:37