SimpleSearch - Line and FST details


Line specific information

 
Line ID 179C08
Vector Used pAC161
Line Availability available as T3 set from NASC (N417120)
Segregation Analysis 50:47:12
Confirmed for Hit At5g67240 At3g15710
Parent of DUPLO pair 397
Parent of pair(s) none

Gene hit At5g67240

 
Sequence (A. th genome BLAST matches underlined) 
>59-K013565-022-179-C08-8409
GTGATCCATGGTAGATTTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGGACAA
TCGAAATTTAGGGTTTTCTTCTTTTTTATTTCTTGTTAATAATTTTAGTTCGGGAAGCTT
ATGTTTTAATTACTGTTTTGTCCTCCTATTTAATCTTACTTTGTTTGATAAAATTTCAGA
TTTTTAATTTTACTAATGTTTTTGGTTTGAAGGTTTATTGCTAATATAAGCCTCCTCATT
GGTCCGTTTAACACATTGAAGAAGTCTTTGAGACCACTCCTATGGGATCCTCCCTATTAG
TG
GenBank Accession AL771328 [GenBank]
Graphic View Graphic view of gene At5g67240
Predicted Position of Insertion Chr5:26828179 - go to primer design
BLAST e Value 2e-119
Hit Clone Code (BAC ID) K21H1
Hit Gene Code At5g67240 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation small RNA degrading nuclease 3
Insertion Classification TS2TE (5')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At3g15710

 
Sequence (A. th genome BLAST matches underlined) 
>59-K013563-022-179-C08-8409
GTGATCCATGTAGATTTCCCGGAATGAAGCACTTACATTGAATTTATCAGAATGTCCTTT
ACTGAAATGGCCGCCTCTTTAACTATCAGAAGACCGTACGTAAAAAAACTACTGTGGAAT
GGAGCATAGCTATGGGATCCTCCTATAGTGAGATTTGTAAGAAAAAATCGAGATTTGTAA
TTTTACTAGTGTTTGTGGTTAGAAGGGCCATTGCTAATATAAATGAACAGATTGGGATGT
TTAACAAATTGAAAAAGACTTTGAGACCACTTATATGCGTATTAATCTTGTCAAGATGTG
ACATTTGGAGAGAGTGAGATACCAATTTCTCAAACACTATAACGCACATGAGAGTAATAT
CAATTGATATCGAAACGAACCGAGAGTGATGGCCTGAGTGAGAACTTGACGGATCTTGAT
AGATTTGATGGAATGTACAGATTCTCCGATGAAACCCATGATTGATTCTTCCTTAGATTG
CGTGTTTTTCCCAGCGAAAGTGATAGGATCAGATCCCTTTGACCCTTCTCCTTCAAACGC
GTTTTAGTGGGAGAAGAGAATGAAAAACAGATTTGATTCGATCCACGAGCGGTCTTGTAA
ATGGGCTAAAATATCGAAATGTGGGGGTAATACTGGTAATTAAAGCGGGTTTAAATATTA
ATG
GenBank Accession AL771327 [GenBank]
Graphic View Graphic view of gene At3g15710
Predicted Position of Insertion Chr3:5324385 - go to primer design
BLAST e Value 7e-129
Hit Clone Code (BAC ID) MSJ11
Hit Gene Code At3g15710 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Peptidase S24/S26A/S26B/S26C family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37