SimpleSearch - Line and FST details
Line specific information
| Line ID | 179E12 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N417148) |
| Segregation Analysis | 100:98:92 |
| Confirmed for Hit | At3g28910 At4g27980 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At3g28910
| Sequence (A. th genome BLAST matches underlined) | >93-K013563-022-179-E12-8409 CTGATCCATGTAGAATTTCCCGGACATGAANGCCTTTACANTTGAATATATGCTGCTTAC AATGACCGACCTAAATCTGCTCCAATCTCTTTCTTCTCTACAACACTTAACCTACAAGAT ATTAGACTGCTTAGACAAACACAAACACATTCTCCTTATTTGAACCACTCTGACTCGTTC TTCCTTCTTCTCCACCGAGGCGGACCAACGTCGTCATACTGAACCGAAGACTCACATATT GATGAAAATAATCGCCTGAATCTTGACTATGAGATCCTCCATAACCTGAGCCGTTCCTCG CTCTCATCTTCACCATCGTCTTCTTCTGCTAATTCCAACTCAAACATCTCAAGAGGCCAA TGGGAAAGGCGACTTCAAACCGATATCCACTTGGCGAAAAAGGCTCTCTCTGAGGCTTTA TCTCCTGCCGTTGCACCAATCATTACATCTACAGTGACAACAACGTCTTCCTCTGCTGAA TCAAGACGCTCTACTTCCTCAGCTATGGGATC |
| GenBank Accession | BX890859 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:10912036 - go to primer design |
| BLAST e Value | 4e-118 |
| Hit Clone Code (BAC ID) | MLD15 |
| Hit Gene Code | At3g28910 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | myb domain protein 30 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At4g27980
| Sequence (A. th genome BLAST matches underlined) | >93-K104550-0022-179-E12-8409 GNAGCCATTTACAATTGAATATATCCTGGCTTCATGACCAATCTCAAATCAGTTTCAATC TCGTTTCTCCTCTAAAACACTTAACCTTCGAGATATTGACTCTTCAAGCAAACCAATCTC CTTCTCCTTCATTTCAACCACTCTCAGTCGTTCTTCCTTCTTCTCCAGCGAGGCGACCAC GTCATCAAACTGAAGCGAAAACTCAAAAATTGATGAAGATTTTGCCTGAATCTTGTCTAT GGGATCCTCCCTATAGTGAGAGGGNTCCNNNCTCTCNTCTTCNCCNTCTTCTTCTTCTGC TNNTTCCNNCTCNNCCCTCTCNNAATGCCNNTGGGGATGTGCGACTTCNNACCGNTNTCC NCTTGGCGAANATGGCTCTCTCGGAGGCTTTATCTCCTGCCGTTGCACCAATCATTACAT CTACAGTGACAACTTCGTCTTACACTGCGGAATCAAGACGCTCTACTTCCTCNGCTATGG GATCCTCCCTATAGTGAG |
| GenBank Accession | FR805198 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr4:13921957 - go to primer design |
| BLAST e Value | 4e-108 |
| Hit Clone Code (BAC ID) | T13J8 |
| Hit Gene Code | At4g27980 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | trichohyalin-like protein (DUF3444) |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | FR805198 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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