SimpleSearch - Line and FST details
Line specific information
| Line ID | 180G04 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N417260) |
| Segregation Analysis | 100:89:89 |
| Confirmed for Hit | At3g23840 At1g33612 |
| Parent of DUPLO pair | 2639 |
| Parent of pair(s) | none |
Gene hit At3g23840
| Sequence (A. th genome BLAST matches underlined) | >31-K013602-022-180-G04-8409 TTGATCCATGTAGATTTCCCTGACATGAAGCACTTTACAATTGAACATATTCCTTGTGAC CGACTGCGGCGATTCTACCCCATAACTTTCGGCTCACTAATAACTAACTTTACTCATATC CCAATCGTGGAGTTCGCTCCGTATACAATACAATCCGAAACATCATAGACGAGTCTCATC GATCACAACCCCTATCATCTTTCGCTTCAGCCGATCGATTTCACAATCTGCTCCAAACTC GCCTCCGCCACCGAGAAATCGACGTGAATGGAACTTATCCTCTGACCATTTCTCACCGGC CTATGGGATCCTCCCTATTAGGGA |
| GenBank Accession | AL771489 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:8612401 - go to primer design |
| BLAST e Value | 8e-58 |
| Hit Clone Code (BAC ID) | F14O13 |
| Hit Gene Code | At3g23840 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | HXXXD-type acyl-transferase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g33612
| Sequence (A. th genome BLAST matches underlined) | >31-K013611-022-180-G04-8409 CGCTCCGTGAACGATAGAATACGAAACATAGTCAACAATCTCATCGATCACACCCCTCTG ATCTTTCGCTTCAGCGATCGATTTCACAATATGCTCCAGACTCGCCTCCGTCGCCGAGAA ATCGACGTGAATGGAACTTATCATCTGACCATTTCTCACCGTGCTATGGGATCCGTCTTA AGAGGAGGCACAAACGTCGGCTTCCCCAAATCGAATCGGAGTTTGTTCCCTGCCGCTCGG AACTCCATCAGATACTTCATCTGGCTGAGGAACTTAACCGGACTCCCTGAGATCTCGTTT TCAGACAGATCGATGGAATCATAGTANTAGGCCCCTGCTATGGGATCCTC |
| GenBank Accession | BX890862 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:12192753 - go to primer design |
| BLAST e Value | 1e-71 |
| Hit Clone Code (BAC ID) | T1E4 |
| Hit Gene Code | At1g33612 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Leucine-rich repeat (LRR) family protein |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |