SimpleSearch - Line and FST details


Line specific information

 
Line ID 218H12
Vector Used pAC161
Line Availability available as T3 set from NASC (N420928)
Segregation Analysis 50:46:44
Confirmed for Hit At5g40280 At4g32850
Parent of DUPLO pair none
Parent of pair(s) 2867

Gene hit At5g40280

 
Sequence (A. th genome BLAST matches underlined) 
>96-K014201-022-218-H12-8409
NATTGATCCATGTAGATCTTCCCTGTGACTGAANGCCTTTACAATTGAATATATCCTGAT
CTATGCTTATCCCAGAATAACAAGCATACGCGAGTAAGAACCAATACAATGAAACCTAAA
AGACCATTGTAAACACAATAGTTATATTCTTGTCGATGCACACACCCAATCTAGCACAAC
CATCAAGAGATACATCACTTGTAAATGTACACGAACAAACAATCAACGAGACACGCTGAG
TCACCTGATCAGATGCAGTGCTATGGGATCCTCCATAGGTGAGACAGTAGTTCAGCTATA
TATATATAATGCGAGATAAAAGTAATAAGAAAAGCTACCTCAAGATGTAATCTCCTATGG
GATCCTC
GenBank Accession AL767393 [GenBank]
Graphic View Graphic view of gene At5g40280
Predicted Position of Insertion Chr5:16103699 - go to primer design
BLAST e Value 5e-19
Hit Clone Code (BAC ID) MSN9
Hit Gene Code At5g40280 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Prenyltransferase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At4g32850

 
Sequence (A. th genome BLAST matches underlined) 
>96-K014201-022-218-H12-8409
NATTGATCCATGTAGATCTTCCCTGTGACTGAANGCCTTTACAATTGAATATATCCTGAT
CTATGCTTATCCCAGAATAACAAGCATACGCGAGTAAGAACCAATACAATGAAACCTAAA
AGACCATTGTAAACACAATAGTTATATTCTTGTCGATGCACACACCCAATCTAGCACAAC
CATCAAGAGATACATCACTTGTAAATGTACACGAACAAACAATCAACGAGACACGCTGAG
TCACCTGATCAGATGCAGTGCTATGGGATCCTCCATAGGTGAGACAGTAGTTCAGCTATA
TATATATAATGCGAGATAAAAGTAATAAGAAAAGCTACCTCAAGATGTAATCTCCTATGG
GATCCTC
GenBank Accession AL767393 [GenBank]
Graphic View Graphic view of gene At4g32850
Predicted Position of Insertion Chr4:15850628 - go to primer design
BLAST e Value 1e-56
Hit Clone Code (BAC ID) T16I18
Hit Gene Code At4g32850 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation nuclear poly(a) polymerase
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37