SimpleSearch - Line and FST details


Line specific information

 
Line ID 222D11
Vector Used pAC161
Line Availability available as T3 set from NASC (N421263)
Segregation Analysis 50:20:19
Confirmed for Hit At3g14040 At2g02470
Parent of DUPLO pair none
Parent of pair(s) 4727, 4734, 4758, 7386, 8510, 12023, 91955

Gene hit At3g14040

 
Sequence (A. th genome BLAST matches underlined) 
>84-K014240-022-222-D11-8409
TTGATCCATGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATATATCCTGCATGTA
GACCCTGTGGGATCCTCCCTATAGTGAGATGCTAGAGTGAGCGGAGGTGGACCGTAAGTT
GGCCTTCCTAGAGACGGACCATCGAGCGGGAATAAGACACTCCGACCGATTCTGTGCGAA
ATGAAGAAGATCTTGCACAAAAAGCCATGCGGTGTGAGGCTTAGTGTTCTTGATCGCTAC
CGAACCCTTAAAATTGCCATTCAATTATACAGGGACTGGACCTTGGATTGGACCTTTGAA
CCATATAGGATACTCGGTTAGACGAGCTGTCGAAGCTTCAAAAGCTGAAGTCTGCAGTTG
AGGATGACGCTATTGGTCTGGGAGTCACAGAAAATCTCTTTGCGCGCCTATGGGAGCCTT
CCTGAGAAGGATCTGGGTCCAGCGAGCCTTGCGGCGGAACTTCACGCGATCGGCAATGGC
GCTGACTACGTCCGCACCCACGCGCCTGGAGATCTGCGAAGCGCAATCACCATCTCGGAA
ACCCTCGCGAAATTTCGCAGTCGCGACGCCAGAGACCGAGGGTTAGATCATGCCTATGGG
A
GenBank Accession FR806022 [GenBank]
Graphic View Graphic view of gene At3g14040
Predicted Position of Insertion Chr3:4649695 - go to primer design
BLAST e Value 2e-08
Hit Clone Code (BAC ID) MDC16
Hit Gene Code At3g14040 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Pectin lyase-like superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At2g02470

 
Sequence (A. th genome BLAST matches underlined) 
>84-K014236-022-222-D11-8409
TTTGATCCATGTAGATTTCCCGGACTGAANGCCTTTACAATTGAATATTCCTGCTTGTAT
GCGCTGTGGGATACACTGTGAATGCGTGCTAAAGTGAGCGATGAGGGATCTTCATTGAAC
TTCTAGACACGTACCTCAGCGCGATTAATGAATCTACGTAACCATTCAAAGCGACATTTG
AATGACTTTCAAACAATCCATCCTGTGTTATGCATATTGTTTGTTGATCGCTGCTCGCAT
CCATAGGATTCTCATTTATAGTGAGAGTGAGTGGACCTTTGCATGGACCTTTGAACGCTA
TGGGATCCTCCCTATAGAGTAGTTGTGAGGAATACAAAGAGATAAAACTTAGCAGAGATT
GATAAAACAAAATGGTGAAACAGAAGAGATACCTTGACGCCGCTATGGGATCCTCCCTAT
AGTGAG
GenBank Accession AL767848 [GenBank]
Graphic View Graphic view of gene At2g02470
Predicted Position of Insertion Chr2:654596 - go to primer design
BLAST e Value 6e-37
Hit Clone Code (BAC ID) T16F16
Hit Gene Code At2g02470 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation alfin-like 6
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37