SimpleSearch - Line and FST details
Line specific information
| Line ID | 230B08 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N422004) |
| Segregation Analysis | 50:11:3 |
| Confirmed for Hit | At4g30100 |
| Parent of DUPLO pair | 12487 |
| Parent of pair(s) | none |
Gene hit At4g30100
| Sequence (A. th genome BLAST matches underlined) | >58-K014312-022-230-B08-8409 CTGATCCATGTAGATTNTCCCGGACATGAAGCACTTTACTATTGGATGTATCGTCTGCTA GCTCTGTTTCTCTGCTTTAAGCCGTCGCTGCACCTGCTGTAAGCATGGGTATCATACCTA TCTTGAGTACTGAATGGATCCGGGATGTGACATCGTCGTTGTCTATCCCTCAGATCTCTA TAAAGCTGTAAGGTCAATTCGTTATAGTAGCGGATGGAAACTGCGTAGGAGGCCGTATCC TGAAGTTTGAATATCTCGCGCGAGTCTAGAGGCAAGTTTTGCAAATGAGGCTGAAATTGT TTTTACAACCGGATCAATCAGTGGCCGTGAACTGTTTTCTCGTGGTACTCATGGCTTCGA TATGGTGGGAATC |
| GenBank Accession | AL762004 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:14717822 - go to primer design |
| BLAST e Value | 4e-41 |
| Hit Clone Code (BAC ID) | F6G3 |
| Hit Gene Code | At4g30100 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At3g14790
| Sequence (A. th genome BLAST matches underlined) | >58-K014316-022-230-B08-8409 AATTTGATCCATGTAGACTTTCCCTGACATGAAGCACTTTACAATTGAATATATTCTCTC CTCGATTTTTCCCTCCTTTAATCCATCTCTGCATATTCTTCAAGCTTGGGTTCATCTTCA TCTTGATCTGAATCGATCCGGTATGTGAACTCTTTCTCTTTCCCTCAATTCTCTATAAAT CTCTAAGCTCAATTCGTTATTGTACGTCTTCGTTCTGCGTTTGATGCCGTATCCTGAAGT TTTTTTTTTTTTTGGGGGCAAGGGGGTTCCCCAAGGTTTCCCCAGGGGACCGGGGGTAAA AGGGGGAAAATTTAGGGGTTTGGGGTTGGGTAAATTGGGAAAAAAAACCTTGGGGCCCTG GGGAACCCCC |
| GenBank Accession | AL762005 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:4964223 - go to primer design |
| BLAST e Value | 1e-99 |
| Hit Clone Code (BAC ID) | T21E2 |
| Hit Gene Code | At3g14790 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | rhamnose biosynthesis 3 |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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