SimpleSearch - Line and FST details


Line specific information

 
Line ID 232G05
Vector Used pAC161
Line Availability available as T3 set from NASC (N422253)
Segregation Analysis 73:62:46
Confirmed for Hit At1g56385 At5g19620
Parent of DUPLO pair 12903
Parent of pair(s) none

Gene hit At1g56385

 
Sequence (A. th genome BLAST matches underlined) 
>39-K014314-022-232-G05-8409
NTGATCCTGTAGATTTCCCGGACTGAAGCACTTTACATTGAATTAAAGCAAAAAAGATCG
GTTGGCATATGACAACTGATAATGCTTCTATACTATCGTTGCTATGAAAGAGCATTATCT
CATAAACGGCGTATTTATAATAACAGAATAGCCTTATATTCGGATGGGAGATATGGCCGA
CCATACATGTTTACCTCAGAAACGATATCGGACGTGGTTTAGTGCTAACTGCTATGGGAT
CCTCCCTTNAGAGAGNTCTATGGGATCCTCCCTATAGTGAG
GenBank Accession AL938146 [GenBank]
Graphic View Graphic view of gene At1g56385
Predicted Position of Insertion Chr1:21106772 - go to primer design
BLAST e Value 2e-49
Hit Clone Code (BAC ID) F14G9
Hit Gene Code At1g56385 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Plant self-incompatibility protein S1 family
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g19620

 
Sequence (A. th genome BLAST matches underlined) 
>39-K014318-022-232-G05-8409
TTTTGATCCATGTAGACTTTCCCGGACATGAANGCCTTTACAATTGAATATATCTCTGGA
AATACATATGGTTAATTACATGAATATGTATTGGTCATGTAAATGTCCTACCTACTAATC
TATCTTCTTCATTCACGGCTAACACATTTTACACCATGTGTTAGAAAATGCTTACCTTCA
TCATTAGAACTCGAAATATTTGTCACGGTTCCAATATCATTAATCCATTTTACTCCCAAC
GTAAATCATTGAATTGACAGATAAGCCTATGGGATCCTCCC
GenBank Accession BX649792 [GenBank]
Graphic View Graphic view of gene At5g19620
Predicted Position of Insertion Chr5:6624474 - go to primer design
BLAST e Value 3e-63
Hit Clone Code (BAC ID) T29J13
Hit Gene Code At5g19620 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation outer envelope protein of 80 kDa
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37