SimpleSearch - Line and FST details
Line specific information
Line ID | 286A06 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N427366) |
Segregation Analysis | 50:50:38 |
Confirmed for Hit | T22O13 At5g24520 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit T22O13
Sequence (A. th genome BLAST matches underlined) | >41-K015494-022-286-A06-8409 AATTTGATCCATGTAGATTTCCTGGACATGAAGCACTTTACAATTGAATATATATCCTGA GCTGCACCACTTTCATTGATTACTAAAGAACAATATTTAACTGCTTACATGTATTAGGTA TCCGATTGACTGAATCTTTTATATGTACTTGTGATAAAGTGGATAATGATCCTGACAGAC ATGCAGCTATGGTGATCCTCCTTTAGATGAGTTCTGTTTCGCTACATAATTCTCATTTGC TATGGGATCCTCCCTTNAGTGAG |
GenBank Accession | AL944953 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr2:11617880 - go to primer design |
BLAST e Value | 6e-09 |
Hit Clone Code (BAC ID) | T22O13 |
Insertion Classification | Genome Hit |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Other FSTs Supporting this Hit | AL944953 [GenBank] |
Gene hit At5g24520
Sequence (A. th genome BLAST matches underlined) | >41-K015494-022-286-A06-8409 AATTTGATCCATGTAGATTTCCTGGACATGAAGCACTTTACAATTGAATATATATCCTGA GCTGCACCACTTTCATTGATTACTAAAGAACAATATTTAACTGCTTACATGTATTAGGTA TCCGATTGACTGAATCTTTTATATGTACTTGTGATAAAGTGGATAATGATCCTGACAGAC ATGCAGCTATGGTGATCCTCCTTTAGATGAGTTCTGTTTCGCTACATAATTCTCATTTGC TATGGGATCCTCCCTTNAGTGAG |
GenBank Accession | AL944953 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:8371851 - go to primer design |
BLAST e Value | 2e-08 |
Hit Clone Code (BAC ID) | T31K7 |
Hit Gene Code | At5g24520 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | Transducin/WD40 repeat-like superfamily protein |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |