SimpleSearch - Line and FST details
Line specific information
| Line ID | 297A03 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N428419) |
| Segregation Analysis | 50:14:12 |
| Confirmed for Hit | At5g12210 |
| Parent of DUPLO pair | 12645 |
| Parent of pair(s) | 92450, 92493, 92511, 92519, 92520, 92521, 92522, 92523, 92525, 92527 |
| Note |
Gene hit At5g46890
| Sequence (A. th genome BLAST matches underlined) | >17-K015553-022-297-A03-8409 TGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATATATTTGTAGGAGC CACCTTCCTTTTCACTATCTTCACATAAAGTGACAGATAGCTGGGCAATGGAATCCGAGG AGGTTTCCGGATATTACCCTTTGTTGAAAAGTCTCAATTGCCCTTTGGTCTTCTGAGACT GTATCTTTGATATTTTTGGAGTAGACAAGCGTGTCGTGCTCCACCATGTTGACGAAGATT TTCTTCTTGTCATTGAGTCGTAAGAGACTCTGTATGAACTGTTCGCCAGTCTTTACGGCG AGTTCTGTTAGGTCCTCTATTTGAATCTTTGACTCCATGGGAATTGGGGATCCTCTAGGT GATCTTGATATCGAGGTCTGTCTTTGCACTGCCCTAAAGGTTAAGGATCTTGGGATCAAC CTTAATGTATGCATGTGTTTAAACGCTGTCCTCCACCATTGTGGTGAGAGGGTTCCCTTC GGTGGCATATGTGCCTGTGAGGATACTCCCTGNCNCTGTGACCNTGATACTGTTTATTCT GTGCCGCCCGTCTTGGTCAAGCCCCTATGGGATGCTGGATATNCCCGAGTGGCCGCTTTA GGCGGCCCGGCATCTTAGGTATCCTATCAACACAATAAATCGGGGGGGGGTGCCGGCCTT TATACCATATCTCCCAACCCTGAAGCTGTACTGTACCATTTACAT |
| GenBank Accession | AL946492 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:19036581 - go to primer design |
| BLAST e Value | 2e-15 |
| Hit Clone Code (BAC ID) | MSD23 |
| Hit Gene Code | At5g46890 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
Gene hit At5g12210
| Sequence (A. th genome BLAST matches underlined) | >17-K015513-022-297-A03-8409 NTGATCCATGTAGCATTTCCCGGACATGAAGCACTTTACAATTGAATATATTCGTAGGAG CCACCTTCCTTTTCACTATCTTCACATAAAGTGACGGATTGCTGGGCAATGGAATCCGAG GAGGTTTCCGGATATTACCCTTTGTTGAAAAGTATCAATTGCCCTTTGGTCTTCTGAGAC TGTATCTTTGATACTTTTTGGAGTAGACAATGCGTGTCGTGCTCCACCATGTTGACAAAG ATTTTCTTCTTGTCATTGAGTCGTAAGAGACTCTGTATGAACTGTTCGCCAGACTTTACC GCGAGTGCTGTTAGGTACTCTATTTGAATCTTTGACTCCATGGGAATTGGGGATCCTTTA CGGGATTCTGCTTATTATGAGCCACCAACAATAGCAAACCTGGCAATAATAACAGTAGAA GATGTGTGATATCCAATGTNATCATACAAAGGTCTCTCTTATTGGAGATGAGCTTTATGC CTACATCACCGAGTTTCTCAGGACGTCCATTTAAGCCCCCAGCCTTTAATTGTCTTTCAC ATAACCACCAACCAAGTGAGTCCTTATCAACATGATGGAGACTCCCAGTGATAGCAAGAG CACCAACGCAGCAGAAAACTGCAGTTACAGAAGAAACAAATAAAGAATACCGTCTTTTTA CCATATCTCCCAACCATGGAACTGTTCTATACAATTTACATAAAGATGTATCAATAGCAC GTCGACTACAGAAAAATAAACATCTGAGTATCTA |
| GenBank Accession | FR807378 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:3949170 - go to primer design |
| BLAST e Value | 2e-172 |
| Hit Clone Code (BAC ID) | MXC9 |
| Hit Gene Code | At5g12210 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RAB geranylgeranyl transferase beta subunit 1 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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