SimpleSearch - Line and FST details


Line specific information

 
Line ID 305G03
Vector Used pAC161
Line Availability available as T3 set from NASC (N429259)
Segregation Analysis 50:43:41
Confirmed for Hit At1g50560 At3g44680
Parent of DUPLO pair none
Parent of pair(s) 3450, 7076, 7147, 8917, 8933, 9439, 9447, 11638, 81007, 81035, 81056, 81070, 81086, 81100, 81119, 81130, 81138, 81146, 81163, 81177, 81189, 81192, 81193

Gene hit At1g50560

 
Sequence (A. th genome BLAST matches underlined) 
>23-K015571-022-305-G03-8409
NTTTGATCCATGTAGATTTCCCTGACTGAAGCCCTTTACTATATGCTAGATCCATGTGCG
CTAGAGAAATGACTCTGACCATGGCTCATCCACTCTAAATGCACTTCCTGTTGCTCCGCA
TCAACCCAGCTATGCGATCCTCCCTATACCGAGCTACACCGAGTAGTGAGNNCCACACNT
GGATCGATCCGTCGTACCAGCTTTGCAATTCATACAGAAGTGAGAAAAATGGCTTCTATG
ATATCCTCTTCAGCTGTGACTACAGTCAGCCGCGCTTCTACGGTGCAATCGGCCGCGGTG
GCTCCATTCGGCGGCCTCAAATCCATGACTGGATTCCCAGTTAAGAAGGTCAACACTGAC
ATTACTTCCATTACAAGCAATGGTGGAAGAGTAAAGTGCATGGTGACGGTGCTCGGCCTT
CTGAATCTCACCGAGGACTCCTTCTTCGATGACAGCCGGCGGCTATGGGATCCTCCCTA
GenBank Accession FR807557 [GenBank]
Graphic View Graphic view of gene At1g50560
Predicted Position of Insertion Chr1:18725832 - go to primer design
BLAST e Value 7e-12
Hit Clone Code (BAC ID) F11F12
Hit Gene Code At1g50560 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation cytochrome P450, family 705, subfamily A, polypeptide 25
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At3g44680

 
Sequence (A. th genome BLAST matches underlined) 
>52-K035338-022-305-G03C-8409
GCCATTTACTTATTCTAGACTATAGATATGAAAGATTTCACCTTTCGATGCATCGATTGA
GCAATAAAGACAAAAACTAGTGCGGTTCAAGTGGATAAAACTTGCTCAAGAGTTACATCA
ATCTCAAGGATTTTGGAGTTTCTTTACCATAAATAAAGAAGAAAAGGGAAAGAAATGAAT
ATACCATCATAAAAGTAAGAGATTTTGTCCTTGGAACGCATCTCTTAAAGAAGAAAAGAC
ACGAAGATCGT
GenBank Accession HG968883 [GenBank]
Graphic View Graphic view of gene At3g44680
Predicted Position of Insertion Chr3:16229536 - go to primer design
BLAST e Value 8e-138
Hit Clone Code (BAC ID) T18B22
Hit Gene Code At3g44680 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation histone deacetylase 9
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL947600 [GenBank]


Last Updated on 10.06.2021 13:37